© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0194500.1
GCGTTGCACCGATTGATTTGATTGATTACTCATTCCAACGGCTCGTTCCAGTACACCTACAACCGAGTACTACAAACAACTTCAACCGAGAAACTACGGGGGTGTTTGGGAGATCCTCTCACAAAACAATAAGTCGGGCTCTCTCCCAAACACCACCCCCTCTCCCAAACACCACCTACACCTACAACCGAGTACTACAAACCAGTTCTCGACTAGATCAAGAATTCAAGATGTGTCTGTAGGTGTTGTTCTGAAGAGCTCCAAGCAGTGTTCTTGGTCGAGGTTTCTGCTCCAGAACTTCTTGTAGTACTCGTCGTAGGTGTAGTTCCGGTAGACGGCCGGGGAGCCATCGGTGATGAGCTTCTGAGCTGGGCCGATGAGCACGTCGTTGCAGGGGCACAGGAACGATGCGACGGACATCCTCGCTTTGTCAGAGTTGACGACAGCACGGTGCCACACGCTCTTGTATCTTCCGTTGCTTAGCGCCTGCAATATATGGAAGTTACAGAGGTTACAAATTCTGCTGCAGAGCAGAACCAACACTTGGAAAATATTTACTGAATAAAAAAAATACAGTTCAGTGCTTTGCAGTTCAGATTTCCTGCAAATATTTAACTACTCTTTGCAAAGTATAAACCATGGCAATTGGCATCCGATAGAAGAATCTTCATTTATCTACTCCTAGAGAAAAATCTCTGTGTGCGACGTATCACGGTATCGATATCTTTTAGTACTATACTCAATCCATTATATCTGGCTGTTTAGGGCCTCTTCGATTCATAAAAATGATAGAATCTGGCCAAGTATTTTCATATAATTTAAATTCCTATGAATTTTTTCCTACATGTCCCTTTGATTATAGAAAAGAAAGGAAACTTTCTATAAGATTGTATTACTTGTTTCATATTTCTTAGGAAAAATAGCAATGAAGTAATTTTCTTTTGTTTTTCCCATAACACTATCAAAAGACTCATATTGTTTTTCCTGTGTTTTTTATATTCATGTAAGATTTGAGAAGTGTTACTACCCTAATTCTTGCGGTTTTTCTATTCTTGTGTTTTTCCTGTCCTGCAAATCAAAAAGGGGTCCTTATTGGTCTTTTTCTATTATCACAGTTATTATAATGTTGGTCAACAGCTCGTCTTTTTTTTTTCTGCAACAAGAAGTGTTTGTCCTAGGTGACCCAACTATATTCTGCCGCACTAGCATTGTCTGCCACCTAGCCTGATCGTTTACCAACAAGCTATACCTGAACACACAACAGCTTCAATTGCCATGGTTAAGGCTGTGTTTAGTTCCACGCTAAAATTAGAAATTTGACTAAAATTGGAAGTTTGAAGAAAAAAAGTTAAAAGTTTATGTGTGTATGAAAGTTTTGATGTGATGGAAAAGTTGGAAGTTTGAAGAAAAAGTTGAGAACTAAACAAGCACTAAGATTTTCAGCAATGTTATCTGAACACCTAACCTAGTCCATTATATACTCTGATAAAAGAAACTGATATATGCATCACCTGTAGCTGATCACCAATGTTGATCACCAGCGCGTTGGGCTGTGGATTCACGGCGATCCACCTGCCTTCCTTGAGAACTTGCAGGCCGGCCACCTGCTGGTCCATGAGGAGGATGGTGAGGGCGTTCGGGTCGGTGTGCGCCGGCAGTCCGAACGTCAGCTCTGGCTCCGGGCACTTGGGGTAGAAGTTCACCGCCATATGCTGCTCCTGCTCACCAAGAACCTTCTTGATGTAGTCCTGTTCCAAGCCCAGGCTCTCGGATATCGCTCCGTACAGTCTGAATCCGAGCTCCCGAACTTCTTTGCAGTATGTGCTTATGATCTCCCTGAAGGAAGGGGGGTTGGATGGCCAATCAGGGAGGTAGCGGTGAAGCGGGTAGCAGTGGAGGCGGAGGTAGTCGCGCCAGTTGTGCACGGTCTCCTTGCGGACGTTGAAGCTGGTGGAGAGGCGGATCTTCTTGGCCGGGTCGTCGGAGTAGAGCTTGGCCTTCTCCTCCGCCGGCAGCCGGAAGAAGTCGTGCGCCACCGCCAGCACCGACAGTGTCAGCTCCACTGGCACCCCATGGTTGAGCACCTGATCAACTCCATCGATCGATTGCATGCAACAGCAACATCCAACATGTGTGAGACCTGCTTATACGAGATGGACGATGTAGTAACGTAGGTAGTAGTGCTAGTGATTTATTATACCTGGAAGAAGCCGTGGGAGCGGCAGGCGGCGCCGACCTGGGAGACGAGCTTGGCGCGGTCGGGGTTGGCGAGGTCGACGACGGGGATGGAGGCGTCGGAGAGCACGTCGGCGAGGCGCGGGCGCTGCGCCTCGGGGCGCACGTAGTTGCCCGGCAGCGTGTCGTGGTCTGCCGTGGAGATGAGCTGGTCCGCCATGCCGCGGTACACACACACAACTTGGCAC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0194500.1 | 3 | 1237662 | G | T |
| Osa03LNT0194500.1 | 3 | 1236444 | T | C |
| Osa03LNT0194500.1 | 3 | 1237902 | T | A |
| Osa03LNT0194500.1 | 3 | 1237405 | T | C |
| Osa03LNT0194500.1 | 3 | 1238608 | A | G |
| Osa03LNT0194500.1 | 3 | 1238942 | T | C |
| Osa03LNT0194500.1 | 3 | 1242890 | T | C |
| Osa03LNT0194500.1 | 3 | 1242891 | C | T |
| Osa03LNT0194500.1 | 3 | 1243383 | C | A |
| Osa03LNT0194500.1 | 3 | 1244129 | C | T |
| Osa03LNT0194500.1 | 3 | 1236855 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0194500.1 | osa-miR5794 | Cleavage | 5.0 | 15.684 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR5802 | Cleavage | 4.0 | 11.906 | 1 | 24 |
| Osa03LNT0194500.1 | osa-miR1319b | Cleavage | 5.0 | 18.236 | 1 | 24 |
| Osa03LNT0194500.1 | osa-miR6256 | Cleavage | 0.0 | 12.089 | 1 | 22 |
| Osa03LNT0194500.1 | osa-miR6256 | Cleavage | 0.0 | 14.467 | 1 | 22 |
| Osa03LNT0194500.1 | osa-miR395b | Cleavage | 5.0 | 18.485 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR395d | Cleavage | 5.0 | 18.485 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR395e | Cleavage | 5.0 | 18.485 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR395g | Cleavage | 5.0 | 18.485 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR395h | Cleavage | 5.0 | 18.485 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR395i | Cleavage | 5.0 | 18.485 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR395j | Cleavage | 5.0 | 18.485 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR395k | Cleavage | 5.0 | 18.485 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR395l | Cleavage | 5.0 | 18.485 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR395s | Cleavage | 5.0 | 18.485 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR395c | Cleavage | 4.5 | 18.485 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR395m | Cleavage | 5.0 | 18.485 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR395n | Cleavage | 5.0 | 18.485 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR395p | Cleavage | 5.0 | 18.485 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR395q | Cleavage | 5.0 | 18.485 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR395v | Cleavage | 5.0 | 18.485 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR395r | Cleavage | 5.0 | 18.485 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR1850.2 | Cleavage | 5.0 | 17.223 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR2095-3p | Cleavage | 4.5 | 17.601 | 1 | 20 |
| Osa03LNT0194500.1 | osa-miR2118b | Cleavage | 5.0 | 24.653 | 1 | 22 |
| Osa03LNT0194500.1 | osa-miR2118n | Cleavage | 5.0 | 24.653 | 1 | 22 |
| Osa03LNT0194500.1 | osa-miR2871a-3p | Cleavage | 4.5 | 6.498 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR2871b | Cleavage | 4.5 | 6.498 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR2876-5p | Cleavage | 5.0 | 15.525 | 1 | 21 |
| Osa03LNT0194500.1 | osa-miR2926 | Cleavage | 5.0 | 20.444 | 1 | 20 |
| Osa03LNT0194500.1 | osa-miR395y | Cleavage | 5.0 | 18.485 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0194500.1 | 3 | qST3-2 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0194500.1 | 3 | qtl3.1 | Resistance or Tolerance | Drought tolerance | RM7332 | RM545 |
| Osa03LNT0194500.1 | 3 | qRDW3-1 | Resistance or Tolerance | Drought tolerance | RG348 | RG104 |
| Osa03LNT0194500.1 | 3 | dth3.1 | Resistance or Tolerance | Drought tolerance | RG104 | RZ329 |
| Osa03LNT0194500.1 | 3 | qRTV3-1 | Resistance or Tolerance | Drought tolerance | RG104 | RG348 |
| Osa03LNT0194500.1 | 3 | nan | Morphological trait | Root | RG104 | RG348 |
| Osa03LNT0194500.1 | 3 | nan | Morphological trait | Root | RG104 | RG348 |
| Osa03LNT0194500.1 | 3 | Hd9 | Physiological trait | Flowering | nan | nan |
| Osa03LNT0194500.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | RG104 | RG348 |
| Osa03LNT0194500.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | RG104 | RG348 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|---|---|---|---|---|---|---|
| Osa03LNT0194500.1 | osa-MIR6256 | 100.0 | 170 | 1 | 170 | 2.56e-86 | 315 |
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)