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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0194600.1

GAAAGTGCTTTTCAAAATTCAATGAAAATGCCTCTTTTTCTGCAAATAAGAGAGCGAGAATAAAACCTTTGATATCACCCTTTTTCTATCTGTAATCACTATGCCCGACCATTAGTAAAAAAGAGGTTGTTCTGCTCAAAAGTTTTGATCGATTCTCTTTCACCTGCAGCTGAGGTTCTTTTTTCTAGTGGGCGTGGCCCATGGAATGCCTCAACTTTGATCTTTATAACAGCTTAGATGCTTAACAGCGACAAATCCTTTGCGTCAGGCAAAATAAAACCAGCATACCAATTTGCGTACTAATACAGTAAACGTCAAGCAATGTACATGTACAGCTTCAGGACGCCACATCAAAACCGAACCAAGGCAGCAGCACACGAGTGGAACCTGAGCCTAGGGCGGAGAGAATTAGTATGTCCGAATGTCGTTACTGCCGTCCTGTTGATTGTTTACAGAGACAATTGTCCCATGTTTAAGGGTCTCAGAACTTGTTTTGCCAGGACCAGACTGATCCATGTTGCCTGGCTTCATTTAAGATTGGACAATGTGACACGATGATAGCATAACCGATGCTTCATTAGCAGCATCTTATGGAGATTTGACAACCTGGAATTTCGCAGGGTGACATGACCAGAGGCCTGGATGGAAGGACGCCCGTGCGGCAGCGTTGTCGCAGGTTTTTTTGTCAGGATTATCCCAACCACCCAACTAATCCCGTCATGTGTTACTCTGAGTTTTCTCTTAGCAGCATAATTTTGTCTTTGACGATCCATCTGGGCATTATTTAGGATGTTTAGTCCTAAAGAAAAGCTTAGTTTGACGGCCAGTATGTTGAGGTGTTTGTCATTTTCTTTGTAACGAAATGACTACTTTCTCCGTCTCACATTGACACATTATAATACTATTAATCTTTGTCTCAC

Coding Potentia
Explanation CPC Score
noncoding -1.3685
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0194600.1 3 1416502 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0194600.1 osa-miR1442 Translation 5.0 9.993 1 20
Osa03LNT0194600.1 osa-miR5082 Translation 5.0 24.276 1 24
Osa03LNT0194600.1 osa-miR2863c Translation 4.5 9.993 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0194600.1 3 qST3-2 Physiological trait Eating quality nan nan
Osa03LNT0194600.1 3 qRTV3-1 Resistance or Tolerance Drought tolerance RG104 RG348
Osa03LNT0194600.1 3 qtl3.1 Resistance or Tolerance Drought tolerance RM7332 RM545
Osa03LNT0194600.1 3 qRDW3-1 Resistance or Tolerance Drought tolerance RG348 RG104
Osa03LNT0194600.1 3 dth3.1 Resistance or Tolerance Drought tolerance RG104 RZ329
Osa03LNT0194600.1 3 nan Morphological trait Root RG104 RG348
Osa03LNT0194600.1 3 nan Morphological trait Root RG104 RG348
Osa03LNT0194600.1 3 nan Resistance or Tolerance Drought tolerance RG104 RG348
Osa03LNT0194600.1 3 Hd9 Physiological trait Flowering nan nan
Osa03LNT0194600.1 3 nan Resistance or Tolerance Drought tolerance RG104 RG348
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus