Transcript

Sequence

>Osa03LNT0194700.1

GAGCTCAAGTTATTTACTAATTACAAAAATATGAACTAAAGTTGCAAAACATAATTGACACAAGTTTTTACAAAAGAGTCAAGTTATGGTCAAACATACCACAAGCTTATAGAAGTACAAACTGACAATGTGTGTCGTAGCTAATAAAATTTTGGCCTTAAAACTTACTCTAGTCAGAGTTCAGTTTCTTCTCGATGCTTGATTTGCTTAGGATAAAAACACCAACAATGATAAGACTAGCACCTACAAACCACTTAGAAGGCAGTGGCTCCTCGAACAGAAAGTACCCTGCAAGACCTGATGAAATGAAGTTGGCAGCAAAATTGGTGACGGTTGCTTGGAGGGATGACAGTGCTTTGAGGCTGTTCACATAGCAGCCCCACATTGTCACATTGAAAAGTATCACCATGCTGTATTTCAGAAGCGGAGGCGCGAAGAACTTGGCGGAGATGGCGGCGAGCGCGGCGTTGAGGCCCGCCGCGAGCGCCCACCCGTAGCCGCCTCCGCGTGCCATCGGAGCTGGAGCTCACCGGAGGCGGAGATCCACTCCACAAC

Coding Potentia

Explanation	CPC Score
noncoding	-1.02321

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0194700.1	3	qHEJ-3	Morphological trait	Shoot/Seedling	RM175	RM22
Osa03LNT0194700.1	3	qST3-2	Physiological trait	Eating quality	nan	nan
Osa03LNT0194700.1	3	qDEF-3	Physiological trait	Flowering	R518	C721
Osa03LNT0194700.1	3	QSbr3a	Resistance or Tolerance	Sheath blight resistance	RG348	RG944
Osa03LNT0194700.1	3	QSs3	Physiological trait	Sterility	RG348	RG944
Osa03LNT0194700.1	3	dth3.1	Resistance or Tolerance	Drought tolerance	RG104	RZ329
Osa03LNT0194700.1	3	nan	Resistance or Tolerance	Drought tolerance	RG348	RZ329
Osa03LNT0194700.1	3	qFDN-3	Physiological trait	Flowering	RZ329	RG348
Osa03LNT0194700.1	3	qHDD3-2	Physiological trait	Flowering	RG348	RM231
Osa03LNT0194700.1	3	qtl3.1	Resistance or Tolerance	Drought tolerance	RM7332	RM545

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus