>Osa03LNT0194800.2

TAGTTGGAATACTAAAGATCACCTCTTCTTTGCTGCTTTTGCGTCAGATTCAGATTTCCACACTATGTCTTTTAACTCTGACGAGAAATTGTTGTAGAAATTGTGAAACTCCAGCGTGTCCCCTCCAGTTTTACGAAGCTCAACCATGTGGAGTGATGGAGCAACCTCGAAAACCTCCGTTGCTACAGATAAATAGCCTTTTCTTCCAGTCTTATCACCTTTTAACTTCATCTTATAATTTTGTTTCCGCACATTGAAACCAAGAGGTCCACAAGCTTCCTCTATTTTAGACATGATCTCCTGTGGTGTACATTGAGATGTGAAGGAAGTTTCCCGCTTCACCATTCCCATCATTTCCTTCTCAAATAAATTTCCAAGGTTGAATCCCTGTGACCTTGAAATTAGAGCAAATGCATTCATGGATTCAGGCTTTTCTCTCTTCTCTGCCACGAGATTCTCCTCTGAACAATCGAATGCAGCATCAACATCATCAAGGCTCACATCTTCACCTTGCTCAAAAAGTGGTGGTTTGTAATCCTTTTTGAACCAATCATCTTCCAAAATTTGTGCAATTGTTATTCTAATGAAACTCATTGGACTAGCAGCAGTCAGCTGGTCAAACTGGTTAGCTGAAGATATATGTCCTTAATTGTCACTTACTGTGCAGGGATTAGGATCAAGTATGCGCTTAATGAACTTCTTCGCACCTGAAGAAAACCAATGTGGACAAGAAACTTTTGCCTTGCAGATCAGTTTGTAAAGGGTCATTAGGTTGGGGTCATCGAAAGGTAAATATCCAGCCATGAGGACAAATAAGATTATGCCGCAGGACCATACATCAGCAGCCATACCATCATAACCTTTATCAGCAAGCACCTCAGGTGCAACATAATTTGGTGTTCCGCAAGCAGTATGCAGAAGTCCATCCTCTTTTGTTTGTGGAGCAAACGCACTAAGGCCAAAATCTGAAACTTTAAGAGCTCCATGTGAATCAAGAAGCAGATTCTCTGGCTTCAGATCTCTATGGTACACTCCTCTGCTGTGGCAATAATCTACTGCATTTATAAGTTGATGGAAGTATCTTCTTGCTTCATCTTCTCCTAGTCTCCCAGAATTGACAATCTTATCAAAAAGCTCGCCTCCATCAACATATTCAAGAACCATGTATATCTTTGATTTGCTAGCCATGACCTCATGCAACTGGACCACATTTGGATGTTTTATTAGCTTCATTGTGGAAATCTCCCGTTTGATCTGCTCGACCATCTTGTGGCGAAGCACATGGTTGCGGTCGAGCACCTTGATGGCGAGGGTGTCGCCGGTGCGCGTGTCGCGGGCGACCTTGACCTTGGCGAAGCTCCCCTCCCCGATCGTCTTGCCGAGCTCGTAGCGCCCCACCCTCGTCGTCCTCCTCGCCGGCCCCGCCCCC

Explanation	CPC Score
noncoding	-1.03764

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0194800.2	3	1515168	G	A
Osa03LNT0194800.2	3	1518198	T	A
Osa03LNT0194800.2	3	1518368	G	A
Osa03LNT0194800.2	3	1518376	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0194800.2	osa-miR397a	Cleavage	4.0	20.033	1	21
Osa03LNT0194800.2	osa-miR160f-5p	Cleavage	3.5	22.364	1	21
Osa03LNT0194800.2	osa-miR167h-3p	Cleavage	4.0	14.103	1	21
Osa03LNT0194800.2	osa-miR172c	Cleavage	4.0	12.182	1	21
Osa03LNT0194800.2	osa-miR1428e-3p	Translation	4.5	15.73	1	21
Osa03LNT0194800.2	osa-miR2865	Translation	4.5	15.317	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0194800.2	3	dth3.1	Resistance or Tolerance	Drought tolerance	RG104	RZ329
Osa03LNT0194800.2	3	nan	Resistance or Tolerance	Drought tolerance	RG348	RZ329
Osa03LNT0194800.2	3	qFDN-3	Physiological trait	Flowering	RZ329	RG348
Osa03LNT0194800.2	3	qHDD3-2	Physiological trait	Flowering	RG348	RM231
Osa03LNT0194800.2	3	qHEJ-3	Morphological trait	Shoot/Seedling	RM175	RM22
Osa03LNT0194800.2	3	qST3-2	Physiological trait	Eating quality	nan	nan
Osa03LNT0194800.2	3	QSbr3a	Resistance or Tolerance	Sheath blight resistance	RG348	RG944
Osa03LNT0194800.2	3	qtl3.1	Resistance or Tolerance	Drought tolerance	RM7332	RM545
Osa03LNT0194800.2	3	qDEF-3	Physiological trait	Flowering	R518	C721
Osa03LNT0194800.2	3	QSs3	Physiological trait	Sterility	RG348	RG944

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus