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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0016600.1

GATGTGCGGAAACTGCACCGTGCCACTGAGCTACTCTCCATGAATGAAGAGCTCAAGCAGGCAAGAAAAGCTTTTGATGTGAATGAAGAGACATTGGCAACAAATAACGAGTGATTTCTCTTGGAGAAACCCCGGCAAAAACTATGTGTAGTACGGAAACTAGTCGTACGATGATCATTTCTCCTGCAGAAGATGTGCATCCATTACATTATGTACTACATTTTTAGGAGAGTAATGAAACATTGTGCAAACTGTCATCCTATTTAGGAGTTATGGAATGAATTTTATCAGTAATCTACGTTTAATATTCTTAAATAGTAAGATTCTGGAGGGCTAATTATTAGCCATCTGGATCCAAACAAGGCTTTGGTTTGGTATTGTTATGGGATAAGATAATCATGTTTGGGGCAATTGCGGGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.00793436
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0016600.1 1 13294602 C A
Osa01LNT0016600.1 1 13294635 A G
Osa01LNT0016600.1 1 13294644 T C
Osa01LNT0016600.1 1 13294763 A G
Osa01LNT0016600.1 1 13294790 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0016600.1 osa-miR5518 Translation 5.0 22.607 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0016600.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0016600.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0016600.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0016600.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0016600.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0016600.1 1 nan Morphological trait Root RM23 RM306
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus