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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0196200.1

GCTCCTCTCCTTTCCCTTCATTTTCTTTCATGAAAAAGATGCGGCCATCACTTGTGAGGGAGACAGACACCTGACTAGCTGAGAAGAAAAAGATCAAGAAACCCAACCCCTCCTTGCTGCTCCAACTCGTGCTATATCATCATCTCTGAAGCCTCCGCAGAGTCAGAGATAGCTCTATCAATGGCACTGCCGTCGTCGTCTCCGACGACGGCGACGTTGGATAGTTGCAAAGATCATCGTCGGTTTCGGAGGCTGTCATGGATGGAGGCTAGCACTTCAGAGGAGGCAGATGATGCAGTGCTGCTGCTGCACGAGAAGAGCAAGAGCTGATGGATTTTGTTGGAGCTGTGTAGGCAAGTCTGATGCTTGGCTGATTTTCTCATACCGTGTTCTTGAGAGAGGCAATCCTTTTCCCTTTCAATTCTCTACCTATTAATTTCGTGGTTCAGGTTTGTTGTTCATTTGTGATTCTGTGCTGTTCGATTGTTTTTGTTCTATATACTTCTGTAAAGATCATTTGATGGTATTGGTCTATGAATAATCGATCTGTGATTGGGTGCATGAGAGATGCTGTGAGGAAAGTGGG

Coding Potentia
Explanation CPC Score
noncoding -1.09712
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0196200.1 osa-miR5805 Cleavage 3.0 18.555 1 24
Osa03LNT0196200.1 osa-miR167a-3p Cleavage 4.0 19.738 1 22
Osa03LNT0196200.1 osa-miR169a Translation 4.0 16.538 1 21
Osa03LNT0196200.1 osa-miR169b Translation 4.0 16.538 1 21
Osa03LNT0196200.1 osa-miR169c Translation 4.0 16.538 1 21
Osa03LNT0196200.1 osa-miR169e Translation 4.5 16.538 1 21
Osa03LNT0196200.1 osa-miR169f.1 Translation 4.5 16.538 1 21
Osa03LNT0196200.1 osa-miR169g Translation 4.5 16.538 1 21
Osa03LNT0196200.1 osa-miR169h Translation 4.5 16.538 1 21
Osa03LNT0196200.1 osa-miR169i-5p.1 Translation 4.5 16.538 1 21
Osa03LNT0196200.1 osa-miR169j Translation 4.5 16.538 1 21
Osa03LNT0196200.1 osa-miR169k Translation 4.5 16.538 1 21
Osa03LNT0196200.1 osa-miR169l Translation 4.5 16.538 1 21
Osa03LNT0196200.1 osa-miR169m Translation 4.5 16.538 1 21
Osa03LNT0196200.1 osa-miR169n Translation 4.5 16.538 1 21
Osa03LNT0196200.1 osa-miR169o Translation 4.5 16.538 1 21
Osa03LNT0196200.1 osa-miR169p Translation 4.5 16.538 1 22
Osa03LNT0196200.1 osa-miR172d-5p Translation 4.0 16.707 1 20
Osa03LNT0196200.1 osa-miR169r-5p Translation 5.0 16.538 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0196200.1 3 QSs3 Physiological trait Sterility RG348 RG944
Osa03LNT0196200.1 3 dth3.1 Resistance or Tolerance Drought tolerance RG104 RZ329
Osa03LNT0196200.1 3 nan Resistance or Tolerance Drought tolerance RG348 RZ329
Osa03LNT0196200.1 3 qFDN-3 Physiological trait Flowering RZ329 RG348
Osa03LNT0196200.1 3 nan Morphological trait Root CDO20 RG409
Osa03LNT0196200.1 3 qHDD3-2 Physiological trait Flowering RG348 RM231
Osa03LNT0196200.1 3 qHEJ-3 Morphological trait Shoot/Seedling RM175 RM22
Osa03LNT0196200.1 3 qST3-2 Physiological trait Eating quality nan nan
Osa03LNT0196200.1 3 qDEF-3 Physiological trait Flowering R518 C721
Osa03LNT0196200.1 3 QSbr3a Resistance or Tolerance Sheath blight resistance RG348 RG944
Osa03LNT0196200.1 3 qtl3.1 Resistance or Tolerance Drought tolerance RM7332 RM545
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus