© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0196300.1
TAAGAATAAAAATATAGGAATTTTCCATATCAATAATATAATTGCCACAAAAAAAACTTGTCCATTCATCTGGTACAATAATGGTGGGAAATCACCAAGTAATGAAATGCATGAAATTCAGCTAAACATCAAAGTCTCACACCTGAAAATACAGTATGGAAAGCGTTGCATTCCTGAAAGAACTGCAAACATCATTACCACAGAACCAAGAGCTAATGATACCATTACTCTCGTGAATTCCATTTATCCACTTGTCCACAAGCCTGAAACCCTGGGCCATTGCGGTAGAAAGGATAGAATCCTCATCAACTCGGCGCTGAATGTAGCAAAGAATAAGGGCTGCATCTGAATCCTTATTAGAAATTAGTTCCCTAGCAGTCTTGAAGAGGGGAAATATAGCGTCAGGATTGTAGGTAACGTCAGTTCCTATTATGCAATCAAAACCTGCTCCATCGCTGGAAAGCTCCCTGACTGCCTTCAGATCATCTTTGTCGCCCCAAAATAACTTCCTGATCAGAATCTTTTTAAGCAAATCAGGCTCCAAGTTAGAGGCAGTATTTTCTCTAAGAAGATCGAGAGATTCTGCGTCTCCATCAGTAGCTACAACAAACTGAGCAACTGTAGCAGCAACCATTGAGCAGATGCCAGCCGAGCCACAGCCCAGTTCCAGCACTCTTTTGCCAGCAAGAATGGAAGGATTCTCTGCTAGAACACTGCACATGAATTGAGCTGATTCCCAAAGCATTAGACCGGTTAATTTGCAGGTGTGCTGGTGTTCTTTTGTGAGCATTTTTATTTCGAAGTCATGACCTTTTGCTTTGATCCGAAGGACCTGAGCCTCATCAAGGTTGTGTGAAGTTCCAAACATATTGTTAAAATCCTCAGAAAGGTCAATTTCTTCACTGGTGCTCTTCTCCTGAGAAGCATTAGCAGTTAACTTATCCTTTTCATCTTCACAAGTGTGGGAATCGTGCTGGCCATTTGGGCCTTGAAGACCAGCTGAGCCAAGGATAAAGGTGGCTTGGATCCAGTTCCTGTTCATCACCAAGTCAAGTGAGCGGTTCTCGACTTGTTTATTGTGCACACAAATCTCCTCAACAGTAAATCCACATGTTGAGAATAAATCCATCAGGTACTCATTTGAAAAGTAATATGCTCGCGTGCCATCCCCTCTGACATAGAAATTCTCACTTATTTGTTGGCCTTTAGACATAAGTCTTTCCTGTGCAAGGTCGCCAAAAGCATAGTCCCGAAAAAGCACACGGCCACCATTTTTCAGAACAGTTCTAACATTCTGAAGAACTAGAGGCATTTTAGCGGGTGCAACTGCAGAAAGCATAAAGATCATTGTTACAACATCAACAGAGGAAGGTTGTACATTCTCAGTTAGTTGCTCTGATGTAATATCGCATGCAAATGCATTTACTCGGTCAGGTCTGTAGTCCTTATGTTTCTTAACCAAGTCAACAGCTCGGGGAGAAAAATCACATGCGTGAACAAATATATCAGGGTATGTAGAAATCAATGGAAATATTGTATTTCCAGCTCCACATCCAACCTCCAAAATCACCATCTTCCCCCCTCCTTGACCCTCAAAGTACTTTCCCCATTCTTTATCCAAGTAGTGTCGATCCTTGAAGAACTGTCCAAATGGAACAGTAAAAAATTCAAATGCATGACAAATCAAATGTAGAAAAGCAGAAATTTAAGCAACCATAAGCATTTGCAGTAGAGAAACAACAATCTGTTGTAGTGGCATATTTGATCCAGAGGTCCAGATTCACTGTATTGTTTGACACCACATTTATCCACCAAGAATATTGACGAAATTTCTTGTTAGCATTGAGAGATATACCAGAACTATAAACAAAGAAGTTCCTTCAACAATTGAGTATCTGGGATCCATTACAGTACCAGCTAGCAATTTGAACAAGTAAACTGAACACGCTATCGATACAAAACAGCATGAATATAGGGAATTAGAACTCTGCTGCTAGGCTTTTCAGTACAATGAAGCGGTCTACACATTCTTGATTTGCTTGAAACTTTGTTTTCACCTGAAGATCAGAGAGCTGTCTGCCACTGCCAGCACACAAAAACACCCAGGAATTCGTGGATCACAACTAATAAGACCAGCGAGAAACTACTGAGACAACGCGAAACCAAAGGAAAGGGTTGCAACACAAACACTGCCAATTATAATCTTCCACATCCAACAGTGCTCTCGCACGAGCTAAATAAATCACATGCAAGAGGAGGGCGGGAGGAAACTAGAATCGCAACCCTGTCCTCGTGGCGCTTGTAGAAGATGTCCCAGTACCTCCTCGCATCCCTCTCGTACTTCTCTTTCCAGAAAGGCGTGACGAGCCTCCCGGAGGATGTAGAGGAGGCGGAGATCTGCTGCTGCTGCGGCTGCTGCTCGCCGGCGGCCATGGCGCTTCGCTTGGTTTGGAGGCTCCACGGCGAGGGTTTCCTGTTTCCTTCTTCTTCCCTGGCCATATGTGTTGGG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0196300.1 | 3 | 2380535 | A | T |
| Osa03LNT0196300.1 | 3 | 2381149 | C | T |
| Osa03LNT0196300.1 | 3 | 2381273 | C | T |
| Osa03LNT0196300.1 | 3 | 2381534 | A | G |
| Osa03LNT0196300.1 | 3 | 2381847 | T | A |
| Osa03LNT0196300.1 | 3 | 2383446 | G | C |
| Osa03LNT0196300.1 | 3 | 2384527 | G | A |
| Osa03LNT0196300.1 | 3 | 2384620 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0196300.1 | osa-miR5804 | Cleavage | 5.0 | 18.439 | 1 | 21 |
| Osa03LNT0196300.1 | osa-miR5823 | Cleavage | 4.0 | 17.233 | 1 | 24 |
| Osa03LNT0196300.1 | osa-miR1861o | Cleavage | 4.5 | 18.557 | 1 | 22 |
| Osa03LNT0196300.1 | osa-miR397a | Cleavage | 5.0 | 20.226 | 1 | 21 |
| Osa03LNT0196300.1 | osa-miR417 | Cleavage | 4.5 | 13.383 | 1 | 21 |
| Osa03LNT0196300.1 | osa-miR444a-3p.1 | Translation | 5.0 | 17.665 | 1 | 21 |
| Osa03LNT0196300.1 | osa-miR817 | Translation | 4.0 | 19.05 | 1 | 21 |
| Osa03LNT0196300.1 | osa-miR1425-5p | Translation | 3.5 | 18.957 | 1 | 21 |
| Osa03LNT0196300.1 | osa-miR1425-3p | Cleavage | 4.5 | 18.06 | 1 | 21 |
| Osa03LNT0196300.1 | osa-miR444b.1 | Translation | 5.0 | 17.578 | 1 | 21 |
| Osa03LNT0196300.1 | osa-miR444c.1 | Translation | 5.0 | 17.578 | 1 | 21 |
| Osa03LNT0196300.1 | osa-miR444d.1 | Translation | 5.0 | 17.665 | 1 | 21 |
| Osa03LNT0196300.1 | osa-miR1850.2 | Translation | 4.5 | 21.813 | 1 | 21 |
| Osa03LNT0196300.1 | osa-miR1852 | Cleavage | 3.5 | 15.641 | 1 | 21 |
| Osa03LNT0196300.1 | osa-miR1860-3p | Cleavage | 5.0 | 24.995 | 1 | 22 |
| Osa03LNT0196300.1 | osa-miR1861a | Cleavage | 4.5 | 18.557 | 1 | 22 |
| Osa03LNT0196300.1 | osa-miR2864.1 | Cleavage | 5.0 | 21.335 | 1 | 21 |
| Osa03LNT0196300.1 | osa-miR2921 | Translation | 5.0 | 14.283 | 1 | 24 |
| Osa03LNT0196300.1 | osa-miR5515 | Cleavage | 5.0 | 15.32 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0196300.1 | 3 | qHDD3-2 | Physiological trait | Flowering | RG348 | RM231 |
| Osa03LNT0196300.1 | 3 | qHEJ-3 | Morphological trait | Shoot/Seedling | RM175 | RM22 |
| Osa03LNT0196300.1 | 3 | qST3-2 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0196300.1 | 3 | QSbr3a | Resistance or Tolerance | Sheath blight resistance | RG348 | RG944 |
| Osa03LNT0196300.1 | 3 | qDEF-3 | Physiological trait | Flowering | R518 | C721 |
| Osa03LNT0196300.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | RG348 | RZ329 |
| Osa03LNT0196300.1 | 3 | qtl3.1 | Resistance or Tolerance | Drought tolerance | RM7332 | RM545 |
| Osa03LNT0196300.1 | 3 | QSs3 | Physiological trait | Sterility | RG348 | RG944 |
| Osa03LNT0196300.1 | 3 | dth3.1 | Resistance or Tolerance | Drought tolerance | RG104 | RZ329 |
| Osa03LNT0196300.1 | 3 | qFDN-3 | Physiological trait | Flowering | RZ329 | RG348 |
| Osa03LNT0196300.1 | 3 | nan | Morphological trait | Root | CDO20 | RG409 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)