© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0196400.1
GATCATGCAAATGTAATTATGATTTGACTTCAATATTCAAATCCAAAGCATAACATCCAACAAGGGAGTCCTCGAGTATATCAGTATATGGGGTTTTGCTTCTTACACCACGAGAAACGCAAGTTTCAGTTGGCCAGTGAACTTAAACCCCTACAAAATTACAAAAAAAAATGTTGATCTGCATCAATTTACACCAATTCAGCAGATGTGCTTGGTTAAATTTTCCAGTTTGTACCATCACCTGTTAACCAAAGCACAAATCAATCATGTGACTATTCAGACTCTGGCTCGCATGGTCTCCATACTGTACCAGTAGGTTCATCCATGAGGGCTATGCCTTTGCTGCCTAGCTGTTTCCTGATTTGGTCAGACACATCAAACTGCTTGTTTTTCCTTGCAGCAGTTCTCTGCTCAATTTGCTCCTGCAACAGTTCTTCAGTCAACCCTGCTCTCTTCAAAGCTTTATCCTTAAGTTGCTTCAGTGCCTCTGCCAAGGAAGAAGGTGGCATCAGACCAAGGATAGATATTTTATTTTTAATTTCTGTCTCAAGTGCAAACATAGCTTGAATATATTCTTCTGGTTGTTTCTGTGCCTGCTGCTGCTTTTGCTTCTGCTGCTTCTGCTGTTGTTGTTTCTTCTTTTGCTGCTCTAGCTTCTGTTGCAACTTCTTAAAATCATTCAAATTGCTGTTAATTGCCTTCAGCAAGTCAGTAAAGCCATCCAGAACATCTGTTGTTCTAAGATCATCCGCCATAGATTCCAAGAATTCTGAATGGTGCTTGTTAACCATATCTTGTTCCTCAACAGGGACCGGGACAGAGATATTCTCTCCACGATATTGAGACAACACTTCCTCACAGTCATATAAAGTCTGATATATGTAGTAGACACGATCAGATGCTATCTCAAGTGCTTTGTCAGAGTGATTCACATCTCCTCTGTAATGTGTGCGCATCAGGAAAAACCTCAAAGCCATGGGATGGTACAGATCAATAATATCTCGGATTGTGAAGAAATTTTTATCTGACTTTGACATTTTCTGATCATCCTTGTTAACAAACCCATTGTGCATCCAACATTTGACCTCACTTTCTGGATAAGCTGCCCGGCTCTGAGCAAGCTCATTCTCATGATGAGGAAATATCAGATCTTTCCCTCCACCATGGATATCAAACACATGTCCTAAATAATGAGCACTCATTGCACTGCATTCAATATGCCATCCTGGTCTACCACGGCCCCATGGGCTATCCCAGAAAGGTTCGCCTTCCTTAGCAGCCTTCCACAGCGCAAAGTCTGCAGGGTTCCGCTTTCTTGTATCGACAGCAACCCGCGAACCAGCAAGATTATGATCTAACTTCCTTCCAGATAAACTGAGATACTCAGGGAAAGTATCAACTGAAAAGTAAACATCTCCTTCCATAGCATAGGCTTTCCCATTCTCCATTATCTTGGTTATCAACTCTATAATATGTTCAATGTGATCCGTCACACGTGGCTCACAAGTTGGGGGTAAGCACTGGAGCTGAGCCATATCGAGAAGGAATTCATTAATAAACCGGCTGCTCAAGCTAGTTACAGTTTCACCAGCTTCATTTGCTCGTTTGATAATCTTGTCATCAATATCAGTGAAGTTGCGCACATATTCGACCTCGTACCCCAAGAATTTAAGATACCTGTAGAGGACGTCGAAGGCGACGTAGGCGCGGGCGTGGCCGATGTGGCTGAAGTCGTAGGGCGTGACGCCGCACACATACATGCGGACCTTCCCCTCCACAAGCGGCTCGAAGAGCTCCTTCTTCTTCGTCATCGAGTTGAAGAGCTCCAGCTGCGGCGTCGGCTTCGCGCTCTCCGCCATCGTGAGAGCGGAGGGGGAGAGTGAGAGGGCTGGACGCCGACGAGCTAACCCTAGAACTGGCGGCGGCGGCGGGGGCAGAAGCAACTGCCACAGCAGGGGTAGAACTTGAGAAGCGAT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0196400.1 | 3 | 2396879 | T | G |
| Osa03LNT0196400.1 | 3 | 2397103 | T | G |
| Osa03LNT0196400.1 | 3 | 2399453 | C | T |
| Osa03LNT0196400.1 | 3 | 2399835 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0196400.1 | osa-miR812r | Translation | 4.5 | 15.794 | 1 | 24 |
| Osa03LNT0196400.1 | osa-miR6255 | Cleavage | 4.0 | 18.6 | 1 | 22 |
| Osa03LNT0196400.1 | osa-miR1861o | Cleavage | 4.5 | 17.474 | 1 | 22 |
| Osa03LNT0196400.1 | osa-miR160c-3p | Cleavage | 5.0 | 15.696 | 1 | 21 |
| Osa03LNT0196400.1 | osa-miR820a | Cleavage | 4.0 | 18.386 | 1 | 21 |
| Osa03LNT0196400.1 | osa-miR820b | Cleavage | 4.0 | 18.386 | 1 | 21 |
| Osa03LNT0196400.1 | osa-miR820c | Cleavage | 4.0 | 18.386 | 1 | 21 |
| Osa03LNT0196400.1 | osa-miR1851 | Cleavage | 4.5 | 13.779 | 1 | 21 |
| Osa03LNT0196400.1 | osa-miR1861a | Cleavage | 4.5 | 17.474 | 1 | 22 |
| Osa03LNT0196400.1 | osa-miR1861d | Cleavage | 5.0 | 17.474 | 1 | 22 |
| Osa03LNT0196400.1 | osa-miR5484 | Translation | 5.0 | 20.932 | 1 | 21 |
| Osa03LNT0196400.1 | osa-miR5489 | Translation | 1.5 | 18.222 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0196400.1 | 3 | QSs3 | Physiological trait | Sterility | RG348 | RG944 |
| Osa03LNT0196400.1 | 3 | dth3.1 | Resistance or Tolerance | Drought tolerance | RG104 | RZ329 |
| Osa03LNT0196400.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | RG348 | RZ329 |
| Osa03LNT0196400.1 | 3 | qFDN-3 | Physiological trait | Flowering | RZ329 | RG348 |
| Osa03LNT0196400.1 | 3 | nan | Morphological trait | Root | CDO20 | RG409 |
| Osa03LNT0196400.1 | 3 | qHDD3-2 | Physiological trait | Flowering | RG348 | RM231 |
| Osa03LNT0196400.1 | 3 | qHEJ-3 | Morphological trait | Shoot/Seedling | RM175 | RM22 |
| Osa03LNT0196400.1 | 3 | qST3-2 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0196400.1 | 3 | qtl3.1 | Resistance or Tolerance | Drought tolerance | RM7332 | RM545 |
| Osa03LNT0196400.1 | 3 | QSbr3a | Resistance or Tolerance | Sheath blight resistance | RG348 | RG944 |
| Osa03LNT0196400.1 | 3 | qDEF-3 | Physiological trait | Flowering | R518 | C721 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)