\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0016900.1

ACATACCATATCATTCACAAATATATATTCAAATTGTTTTCATCTTGCTTGTCAGTGAGAGATTACAGTGTGGCTAACTGCTATGACCTGTTAGCAATTGTTGTTCATGGAGTTGAAAAATGGGCATGGTAGCCTTAGAAGAAATGAAAAAATATCTATAAATTCATTTTTCCACTATGTGACCAATAGTTTTACACTCGTGTTAAAAAGTCACATGTTTGATATTAAAAAATTTCAAATAAAATTACCCCGCATGTCAAGTCAATTTTGTTAAAAAAAATACAAATTTGGCATACAATACTATTTTTTTAATATTAGAATTTATAAACAATATTTATTTAAGATTGGATAATGGATACACATCTCTACTAATATAAAATTCAGTTTTTTTAATGTCACATGAAAAGAAATAGGTCAAATCAGAAAAATCTCTATTTTTGGAGAGTTCCATTTTCATGGTAACATGCGTGCGGAGATGAATGGAAGGAAAAATTCCAATCTCCCGTGATAATATGCATGCGGAATAATCTAACTTATATGGTTGGTAGTGTGCATGCATGCGGAGGTCAATGGAGGGAATTAGTCCCCAACTAATTTATCTTTTCGCCTTTTGCGCTCCAACTAGCACCATTGGCTATAAATAACCGATGTTGGATGAAGCCTCCAAGCACAATACCGTACATCCTCCTACTATCGTCGACCTCCAAAATTGTTCAGCTGACAAAGGCAGGACAAATTTGGAGGTCGATGATAGTAGGAGGATTTCTGAT

Coding Potentia
Explanation CPC Score
noncoding -1.10957
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0016900.1 1 13389480 T G
Osa01LNT0016900.1 1 13389683 A G
Osa01LNT0016900.1 1 13389773 C T
Osa01LNT0016900.1 1 13389780 G C
Osa01LNT0016900.1 1 13389853 T C
Osa01LNT0016900.1 1 13389876 C T
Osa01LNT0016900.1 1 13389994 T C
Osa01LNT0016900.1 1 13390238 C T
Osa01LNT0016900.1 1 13390247 G T
Osa01LNT0016900.1 1 13390262 T C
Osa01LNT0016900.1 1 13390534 G T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0016900.1 osa-miR160c-3p Translation 4.5 22.59 1 21
Osa01LNT0016900.1 osa-miR160e-3p Translation 5.0 22.59 1 21
Osa01LNT0016900.1 osa-miR167h-3p Cleavage 5.0 23.53 1 21
Osa01LNT0016900.1 osa-miR2932 Cleavage 4.0 23.431 1 19
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0016900.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0016900.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0016900.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0016900.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0016900.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0016900.1 1 nan Morphological trait Root RM23 RM306
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus