>Osa03LNT0196800.2

GGAGAATTTGAGACGGCCACAGCATTTTTTATTATTATATAGAGCGATACATATACATAATAATCTACGCTTCCCTGACAGAACAGAAAGAAAAGACTAGAAGGCTACAAAACACTGCCAACTCAACTAGATACAAAATGCACAGATCAAGAAGGAAAATCTTCTATAGAGGGCAAAGAGATTGTACAGTGTGGTATTGGAGGATCTCTGCATATAGCAGGCTATATTTATCAACCTGATGGTCTTTGGTAGACATGCTTTGTTCTAGGGTCAATTATTATGCCCTTTCCACCATTCACTTCGAGATCATGCTGGAAGACAAAATCAGGAATTGTCAGTTGTTCACGTGGTACGTATCTGAACAGCTGCACAAGTCTGTCGACATAGATAACTTTCTTCCAGACCTCCCCATCAACGAAAAGCTGCAAAGCCAATATAGCTGTTCTCAATCCCAAAGTTGGGTGAAGTACATATATAGCATGAAGATTGCGCTGATGCTTCCGACCTAATATTTGTTGCAACCGCTTCATGAATCCTAAATCTGGTCGCACTTGTAAAGATGCTGCTGAGTGGAAATAGACAATTGAGTAAGGCTTTTGAATCAATGGTTCAAACTCCTGCAAAGAAGGCAAATTTAATCCTGTCAGAATAAGCTGCCAAATTCAAATACACAAAGGCATTAACAGTGGTCTAGATAGGCTAACTTTTGGGCAACGAACTTAGCTAATCTATTATATAGTTCATTTGGGAATTCCTGCCATGATGCTTGAACCAGGCCCGCTTCAAAAAAGTTAGTGGGAAAAAACAAAACTGTTCCTTTCTATTGGAACTATAGATATTAGATGCTCTGTGGCTCTCTGGCACTACTGTATGGAACACACCTCATAAGTTCATAACAGACACTGTATATTGGTTCCTGCAAACTCATGATTTCAAAACAAGATGGATGGAGTACTAAACTTGGTGTTCCATCCAGTATGTCCTGAATATTGAGAAAATCCAGGTTGATTCATGGACAAAGTAAAAACCATCTATTTAACACAAGGCAGTAGGAAACTTGGATTATATACAAGTATTTATATTCCCTTCCTAAAAAAACTTCCAAGGTCCACCCCTCATTTAAGATCAACCCAAGGAATATGTTATCTCACTGTAAAAAAGTAATGCAACTAAGGAGAGTCTCATAAAATATGCTGCATCAATCTTTGGTATCTGCAATCTAGTGGAATTCCAATGCTCTTTGTAAAGGGGGGAAATTCTAAAGCTCTACAAAAAATAGAATCATCATCACAAGGTATAACGAATAGAAATGGTTGCATTGAAATTACTTGTTGAGAAAAAAACACATTAATAGATAGGAATCATCAGCTTGTGGTCAGGGTAGAACAAATGCTGAGAAACTCCATCGCTCTCATATGCACTGGAAATATGTAACTGACAGCTATCAGCTAATCTTTGGGAGTTCACAAATTCACTTCAGTTATGTCCGGAAAGGCAATCAGGCCTTCTGCATCCTATATTGTGCAAGTCGTGTATCTCAGTTAGATTGATAATTACCTTTACTACATATAGAATAAATCGCTCAAGATCCAAACAGCGAAGTAGAAAGTGAGCACCAACAACCACCATAACAGGACGCCCTTCACTATCAACTCCACCGCGGTAAATTATTTTCATCTCAGCAATCTCTGAGAGACTGAGAGAATTTGCTTTAGCAAGGTGTCATGAATGAAGTGAATAATCTTCAGCAGCAGATAATGGAGGACCACCAAGGTCGCCAAATCCAACCAATTTAGCCCAATTAAATCCCTTGTTTGCCTGAACAGACTTTTCCAACTGCTCCTTGCGTCGGAGATCTGGATCTTTAATTAGTGACATAAAGGCAGGATCCAAATATGAATCTAACTTGAAAGAATTCCTACTACGTGTCAATCCAGAATCAGAAAGAGGAATATCTACTGGCGCAGGAGCTGCAGATTTGTTAATAGCAGACCCAGCAGGCAAAGGTTTTATTCGTATTTTCCGTTCATCTATTATTGTTTCACCATTCTCATCCCCAACATCAGCTGGAAGTTTCAATGAAGCAATCTCTTCCTCTTTCTTGTCCCGAGGGAAATATAGGGGAAGCAATCGCTTATATATCTCTGTATCAGATGATGTAGTAGTACAAAAGACAACAGCAGTTATTTTGCCTTTCTGCTTCTCCAGAAAACGTCTAACAGTTCTTATTGCAACATGAGCAGCCGGTTCACGAGGGTAATTTTTGGCTTCTGTATATATGCAACCCATTGCAATGCTTTCCAGACCATTCTCAATGAGAAGTTCCAAACAAGACCTGTAGCAGTGGCTAAGTGCATTCTCTGCAGCTGTGTGATACTTGACAGCATATTTAGGGCCCACAGTATGAATTACCTTCAAACAAAATCAGATCACCAACCGAGCAGGCAGATCATATGCATTGGTCATCTTAGCCATCCCAGTCCGGCAACCACCCTGTAATCATCGACAAAAATAAAATCCTCATATGAATTGCAACCCAAATAATCCAATTGACCCCCAAAACAGCAACCCCAAAATCAAACCGCACCAGGGTGGTGCACTCCTCGGCGAGCCCTGGCCCAGCCGCTGCATGCAGCCCTGGACTACTATGCGCCTCGTCCAAGTTCTCATTTGTCGAATTGACAACGGCATCGACCTCAAGGTTCCACGGGTGGCCGCGCCAGAGACAGATCTTCGAGTTGATCTCGTGGTCGACGGGGAACCGCGACGCGCCACGGCCCCCGGCCCCAGCGGCCGCGCCGTCGCCGATGAGCGGGTCGGCGAACGAGAGGAACGACGAGGCGGGGGTCTCGTCGGATCCGGCGGCGGTGGGGGATGAGGAGGGGGAGAGGCGCTGGTCGGCGTCGCTCCACCGCGGCACCTGGTCGAGCGTCACGGCCGGCTCCACCCCGCCCACGCCCGCCGCCGCCGCCACCGAGGAGGCCGAGGCCGAGGCCGACGCGGCCGTCGGCGAGCGCTGCTGCATGGCGACCGGATCAGAGCCGCGAGCGCGAGGGCATGGGCGGCGATAGGTGCGGGTTCGCGCGCGCGCGCGAAGTGAGAGAGAGCGGCCAAGC

Explanation	CPC Score
noncoding (weak)	-0.251515

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0196800.2	3	2827820	A	C
Osa03LNT0196800.2	3	2825840	A	G
Osa03LNT0196800.2	3	2827296	T	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0196800.2	osa-miR6245	Cleavage	5.0	7.856	1	21
Osa03LNT0196800.2	osa-miR167a-5p	Cleavage	4.5	11.078	1	21
Osa03LNT0196800.2	osa-miR167b	Cleavage	4.5	11.078	1	21
Osa03LNT0196800.2	osa-miR167c-5p	Cleavage	4.5	11.078	1	21
Osa03LNT0196800.2	osa-miR167d-5p	Cleavage	4.5	11.078	1	21
Osa03LNT0196800.2	osa-miR167d-3p	Cleavage	4.0	19.109	1	22
Osa03LNT0196800.2	osa-miR167e-5p	Cleavage	4.5	11.078	1	21
Osa03LNT0196800.2	osa-miR167f	Cleavage	4.5	11.078	1	21
Osa03LNT0196800.2	osa-miR167g	Cleavage	4.5	11.078	1	21
Osa03LNT0196800.2	osa-miR167h-5p	Cleavage	4.5	11.078	1	21
Osa03LNT0196800.2	osa-miR167i-5p	Cleavage	4.5	11.078	1	21
Osa03LNT0196800.2	osa-miR167j	Cleavage	4.5	11.078	1	21
Osa03LNT0196800.2	osa-miR435	Translation	5.0	15.485	1	20
Osa03LNT0196800.2	osa-miR396e-5p	Cleavage	5.0	12.124	1	21
Osa03LNT0196800.2	osa-miR1865-5p	Cleavage	4.5	6.199	1	24
Osa03LNT0196800.2	osa-miR1876	Cleavage	4.5	14.144	1	24
Osa03LNT0196800.2	osa-miR396f-5p	Cleavage	5.0	13.532	1	22
Osa03LNT0196800.2	osa-miR2867-3p	Cleavage	4.5	24.792	1	20
Osa03LNT0196800.2	osa-miR5490	Translation	5.0	11.319	1	21
Osa03LNT0196800.2	osa-miR5490	Translation	4.5	14.289	1	21
Osa03LNT0196800.2	osa-miR5507	Translation	5.0	7.295	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0196800.2	3	nan	Resistance or Tolerance	Drought tolerance	RG348	RZ329
Osa03LNT0196800.2	3	nan	Resistance or Tolerance	Drought tolerance	RM231	RZ329
Osa03LNT0196800.2	3	nan	Resistance or Tolerance	Drought tolerance	RM231	RZ329
Osa03LNT0196800.2	3	nan	Resistance or Tolerance	Drought tolerance	RM231	RZ329
Osa03LNT0196800.2	3	qFDN-3	Physiological trait	Flowering	RZ329	RG348
Osa03LNT0196800.2	3	nan	Morphological trait	Root	CDO20	RG409
Osa03LNT0196800.2	3	qHEJ-3	Morphological trait	Shoot/Seedling	RM175	RM22
Osa03LNT0196800.2	3	S34(t)	Physiological trait	Sterility	nan	nan
Osa03LNT0196800.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0196800.2	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0196800.2	3	QSbr3a	Resistance or Tolerance	Sheath blight resistance	RG348	RG944
Osa03LNT0196800.2	3	qDEF-3	Physiological trait	Flowering	R518	C721
Osa03LNT0196800.2	3	rn3	Resistance or Tolerance	Drought tolerance	RM231	RM175
Osa03LNT0196800.2	3	qtl3.1	Resistance or Tolerance	Drought tolerance	RM7332	RM545
Osa03LNT0196800.2	3	QSs3	Physiological trait	Sterility	RG348	RG944
Osa03LNT0196800.2	3	dth3.1	Resistance or Tolerance	Drought tolerance	RG104	RZ329

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus