© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0197000.3
CCTGGGCAATTACGATTGCCCCAAAATTCGACAACATTTCTTTAATATTTGCCATCACGGCACGATCAATTGAAACACCAAGAGTTAAAATATTTGCCCGCCGTACACTTCGAGAGCTTATAGATAATGTCTTAAGCAAAAACGAGTGATGTATGCGAACTTAGTGTTGAATAACCCATGCTATAAAGTACAAAAGGCTGCATGACATAATGTTACAGGAGACCGTTACACAGCAATAGAGCAAGAATCTTCAGCGATCAACCGAAAGTTGCTGTCCGCTAGCTCGGGAACTTCGTTGAGTACTGCTGCGGAGACATAAATGTTGCCGTAATCATCTTTCCCGCAAACCACCTCCCATGAAGTGCTTTCTGTGCACTCATGGCAGCTGTTATACTGTCAAATCGAAGGTACACAAAGCCAGAAGTATTCTTGTCCACAAAAATGTGTTTTACTTGGCCAAACTTGGAGCATTCTTCTTGGACATCATCTTTGATATCCAAATCAAAATCAGGGTCCGTCTCCACGGATGGATCAAACATATTTTTAAGCAATAGGCATTCACTGGGTGGGGCTGTCTCAATGGCTTGGGTAGTAATTGGAAGAGACACCCCAGGAACTGAACCAAGACCAGGCACTGTAGGCAGTACAGATGCAGCGACTGGAGGAGCACCAAGAACTGATGCAGGTGGTAATCCAACAGAAGTGTTCAAACCAGTACCGGCTATCCCAGCAGTCAAACTGGTGGTAACGCCGCTACGGTCTAATTTCTGCATCAAAAGAGCTCTTGAACTAGCATTCAGTGCCAAACCTCCACCTTCATCATCATCCAAATCTCCAGTAGTTACTCCACTGACTTGAACTCCTGCTTGGTCTGTCACAGCAGAAACCTTAATCACACGTCCAGCTATATCAAGTTGCCCATTTAAACTCTGAGCAGCCTTTGCATCTTCAAGGCGTGCAAACTGAACAAAACCAAAACCTTTACATAACCCAGTAAGTGGATCTAGTGGCAATTGGACAAGCTCCACCTGACCAAACGGTTCGAAGACCTGTCTCAATTGATCTTCAGTAATATTTGAGTGAAGATTTCCAACATACAACTTTCTTGCCCCACCTGAAGCTGCTCCACTTGAAGAAGCATTTGACTGAACTAAATTCTTTTCAGCCTCTGATGGCTTAACCATCACCTGTTGACCAAGAAGCAGCTGGCCAGAAAGAGCTATTGCCATTGGTACAGACATAACATCATAGAATTCGATGTACTTCCCCCAAAAAGATCTTGTATTCCATCTTAGTCATAAGTAGCTGATTATCCCAGTAGATACACCAAATTATAAACATTCCCAACTCCTTTAGAACGGCGCGAGTTTCGGTCCATGATGAGGCGAACATCCCGGACCTTCCCAGCCCTTGAAAAGAATTCGTACACGTCTCTTTCATCCGCCTTCAGAGATAACTGGTAGGCAAATACTGTCCTTTGATCTCGTTCTGGATCTGCTTCAGGCTCTCCAGCCTCTTCTTTCCTACGTCTGCACAGACAATAAGCAAAACTGTCATAAGCATTGATACGAAAATATAGAAAAATATATATATAATACAAGCCCACATTAATCATCAGCTCCAACAGTAATGGAGTTCCTCATAAAAAGAATACTACCTCAGTTTCTCAATATCAATCATTCCCTACATGTTAGTGTCCATCCATACTAATATAAATTTATATCACCACTCAATCCTCTCTCCCTACCTCTAACGGTCTCACCTAAATAACAAGATTTGTTAAGATCACAACGCTTAACTACCCAACAAGTTATCCAATAATAATAATTGAAGAAATGAATGTGTCAGATCTAGGGGTCCAGGAAGAATAACTTTCAACGTTCACTGAGCATAGTTCAGCCATCATTATAGATCATAACTGACTAATCGAGTTAGACATTTCATTAGAATATGTGGCCCATCAACATTCTATCAAGTCACATCGTAACAAGACATGCCTTGGAGATAAGCAAAAAATGTAGTGTAAAAAGCCCTTTGTTGTAAGGCATAGACATGCATCACCATGATTGGGGGTGAACAAAAACGGTTTTACTAAACCATTTGACCCAGTGTTGCACATGCATGCATGCAGCTGCTCCCCCCCCCCCTTCTGCATGGATGCATGCGGTTTAGAACGGTGAGTGGGCTCTGAACCATCATCTAACCAGGTTTCGCACAACTCTTAACTCTGACAACTCAAAGTTGACATCTCCTGAAAAGGGTAAAAAGCAATAAGGGTTGTTTGTGCAGCGGGCCGAATACTGAGTCCCCTTAACAATAAGACACAATGCTTCAGTGAAGAAGCCCAAAACACCGCTCACCAGCATTTCTGACATCGCGGTCACGGTAGTCTCGCTCGCGGTAGCGTTCGCGGTCACGTTCTTCGTCGTCGCGGCGGCGCTCGGACCGGCTCCGGCTCCTCCGCTCTCTATCCTTCTCCCTCTCCCTCTCCCTCTCCTTCTCCTTCTCCTTCTCCTTCTCGCGGTCCCGGCTTCTCCTCTCCTTGTCCTTGTCCCTCTCCTTCTCCCTATCCTTCTCGTCCCGGTCTCGGTCGCGGTCGCGGTCGCGACGCTCCCGGCTGCTGCGGTGCCGGTCCCGGTCCTTGTCGCGGTCGCGGTGCCGGTCCCGGTCCTTGTCCTTGTCGCGGTCGCGGTTCTCCTCCGAGCGAGAGCGCTTGGATCTGCGCTCGCCATCGTCGCGCTCTTCGTCGCCGCCGCCGCCGCCGCCGCTCCGGCGGCGAGAGCTTCGCTCCTTCTCCTCGGATCTGGGCGCGGCGGCGCCGTTGGACGGCGCCCCGGAGCCCTCCACCGTCTTCTCCAAGTAGTCGTACTCGTCGAAATCCATGGCGACTCGCGGCCGCGGCGACGCGGAAACCCTAGATGAGGAAAGAGAAAATTGGGGGAGGGAGAGAGCGCGCAGCTAAACCCCCAGTCC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0197000.3 | 3 | 2924821 | A | T |
| Osa03LNT0197000.3 | 3 | 2923811 | C | G |
| Osa03LNT0197000.3 | 3 | 2923926 | A | G |
| Osa03LNT0197000.3 | 3 | 2927652 | G | A |
| Osa03LNT0197000.3 | 3 | 2927011 | A | C |
| Osa03LNT0197000.3 | 3 | 2928977 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0197000.3 | osa-miR531c | Cleavage | 4.5 | 24.425 | 1 | 24 |
| Osa03LNT0197000.3 | osa-miR164e | Translation | 4.5 | 7.271 | 1 | 21 |
| Osa03LNT0197000.3 | osa-miR169i-5p.2 | Cleavage | 4.0 | 6.411 | 1 | 22 |
| Osa03LNT0197000.3 | osa-miR531a | Cleavage | 4.5 | 24.425 | 1 | 24 |
| Osa03LNT0197000.3 | osa-miR1846a-5p | Cleavage | 4.5 | 7.973 | 1 | 21 |
| Osa03LNT0197000.3 | osa-miR1846a-5p | Cleavage | 4.5 | 24.08 | 1 | 21 |
| Osa03LNT0197000.3 | osa-miR1846a-5p | Translation | 5.0 | 19.143 | 1 | 21 |
| Osa03LNT0197000.3 | osa-miR1846b-5p | Cleavage | 4.5 | 7.973 | 1 | 21 |
| Osa03LNT0197000.3 | osa-miR1846b-5p | Cleavage | 4.5 | 24.08 | 1 | 21 |
| Osa03LNT0197000.3 | osa-miR1846b-5p | Translation | 5.0 | 19.143 | 1 | 21 |
| Osa03LNT0197000.3 | osa-miR1870-5p | Translation | 5.0 | 13.214 | 1 | 24 |
| Osa03LNT0197000.3 | osa-miR1883a | Cleavage | 5.0 | 14.932 | 1 | 24 |
| Osa03LNT0197000.3 | osa-miR1883b | Cleavage | 5.0 | 14.932 | 1 | 24 |
| Osa03LNT0197000.3 | osa-miR1846c-5p | Cleavage | 4.5 | 7.973 | 1 | 21 |
| Osa03LNT0197000.3 | osa-miR1846c-5p | Cleavage | 4.5 | 24.08 | 1 | 21 |
| Osa03LNT0197000.3 | osa-miR1846c-5p | Translation | 5.0 | 19.143 | 1 | 21 |
| Osa03LNT0197000.3 | osa-miR3979-5p | Cleavage | 5.0 | 21.36 | 1 | 20 |
| Osa03LNT0197000.3 | osa-miR5508 | Cleavage | 5.0 | 11.94 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0197000.3 | 3 | qHEJ-3 | Morphological trait | Shoot/Seedling | RM175 | RM22 |
| Osa03LNT0197000.3 | 3 | S34(t) | Physiological trait | Sterility | nan | nan |
| Osa03LNT0197000.3 | 3 | qOE3-1 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0197000.3 | 3 | qTA3 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0197000.3 | 3 | rn3 | Resistance or Tolerance | Drought tolerance | RM231 | RM175 |
| Osa03LNT0197000.3 | 3 | qtl3.1 | Resistance or Tolerance | Drought tolerance | RM7332 | RM545 |
| Osa03LNT0197000.3 | 3 | qDEF-3 | Physiological trait | Flowering | R518 | C721 |
| Osa03LNT0197000.3 | 3 | QSbr3a | Resistance or Tolerance | Sheath blight resistance | RG348 | RG944 |
| Osa03LNT0197000.3 | 3 | nan | Morphological trait | Root | CDO20 | RG409 |
| Osa03LNT0197000.3 | 3 | dth3.1 | Resistance or Tolerance | Drought tolerance | RG104 | RZ329 |
| Osa03LNT0197000.3 | 3 | nan | Resistance or Tolerance | Drought tolerance | RG348 | RZ329 |
| Osa03LNT0197000.3 | 3 | nan | Resistance or Tolerance | Drought tolerance | RM231 | RZ329 |
| Osa03LNT0197000.3 | 3 | nan | Resistance or Tolerance | Drought tolerance | RM231 | RZ329 |
| Osa03LNT0197000.3 | 3 | nan | Resistance or Tolerance | Drought tolerance | RM231 | RZ329 |
| Osa03LNT0197000.3 | 3 | qFDN-3 | Physiological trait | Flowering | RZ329 | RG348 |
| Osa03LNT0197000.3 | 3 | QSs3 | Physiological trait | Sterility | RG348 | RG944 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)