© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0197200.1
CAAATTTTGGGACTTATACTCGTTATTGTTGCCCACAATTGACCTATGAGGCAAGTAGGAACAGATATGTCGCGCTCTGAACAAGTAGCAGAAAGACAGAACAGTTAAAAAAGATCTATCTTTTCGTGGCGCAATTTATATATATATAGTTACAAACTTCTCTATGTCCAATCATCTGGTAAGAACGGGTGCCATCCTAGCAGAAATCCAGACTCCTGTTAGTGCACTCGACGACCGATTCGCTAGCTGGCTGAAGTCTTCGTTCTTCTCAGAGACATGTACGCTAGAACCCTGTAGCCGATGATCATCGCGACCAGAGCTACAACTTCTGTCACGCCGTTGTCAAGAGGTATGGCATTGATCAGAATGTCCGGGACAGGATGATATTGCACCTTCAGCAGTAGCCTGTACGTGTGGTAGTTGAATGACAGGTAGCGGAGCCAGGATATGAATGGTGGAACTCTCTTTACAAAGAACCCTCCTGCTAGCATGAATGTCATGACTGTAACTGAAGCTAGAGTTGTTGCCTTCTTGATATCCAAGAGGCTAGCTCCAATTGCCAATCCTAATCCCTGAGCAGCAATGATGCTGAGGAAGACGGTCAACATGCTAAGAAAGAAATGTGCGGCAGTTGCTTTGAGGCCTGCCATGAAGTAGACAATCACCATAAATATGACTGGAAGGAAAAGGTCCAGTGGCAGATCACTTGTCGTTCTGGCCAAGAAGTATGCACTGAGCTTGTACATGTCAGCTGCACGCTCCTTGTTCAACATTGCCCTTTCTTGTGGGAATGTGAAGATGGCAGTAAACACAGGAAAGAAACCCCAAAACACAGCTATGAAAAACAGTAAGCCGGCCTGATCTTGTAGACCTTTTGGTGTCGAGGGATCAGAGTGCCACCATAGTAGACCTAAGATAACTGATGTTGCTATGACCTGGGTGATTCTCATCCAGCTCAAATAATCATGTCGCCGTTCTTTGATCCCTCTACAGAAGAGGATGGAATATTGCTGCCACCAGCTAGTGCCCCATTCTCGCTTTGATGATGTTATAGTTGTCTTCATATCGTCACTGATTGGAAGTGGATCTAGAAGCTGCTTCTTCGCCTTGTATGCCACTCGATTCTCATAGGCGTCTACAAGATACTCATGAACATCTTGTGCTGATGGCTTGTAGTCATTCTTGGTATTAGTTTGCAGGTTTTGATTTTCCATGTGCACCTTGTCATCTAACTCGGAAGGAACAGAAACATCAGTAGTGTTTCCGTTGGCGAGATCCAGTAGAAATTCTGCTGGGTTCATTGCGATGAGCGGGGTGCACCCAATGGACTGAAAGTAGGGCATGGCTTCAGATGCCTTCCCAAAATAGAGCAAACTTCCTCTTCCCAGGAGGATAAGCTTGTCAAACTTATGAAATAATCTGCTAGATGGTTGATGGATTGTTGTTATTACTGTCTTCCCATCCTCAGCTATATCATGTAGAAGTTGAATTATCCTGAGAGCTGTAGTTGAATCCAATCCAGATGTTGGTTCATCGAGAAAGAGTAAAGATGGATTTATTATGATCTCATTTCCAATGCAAACTCTTTTCCTTTCACCCCCTGAAACCCCACGGACGAAAGATCCACCAATCATCGTGTCCTGGCACCTTTCAAGGCCAAGTTCATATATGATGTCTATTGTTCGTTCTTCCTTTTCTTGCCTCGTCATTGTTCTTGGGAGACGAAGCAGTGCTGCATAAGTCAATGTCTCCTTTACAGTAAGATGAGTAAAAAGAACATCATCTTGAGTCACAAATCCAATCCTCACCAGAGCACGCTACGACATGGCGCAGACATGCGATCGAGAACAACGGGCAGGCGACTCCCTGAACGTCCCGACCGTGCTCCGCCGCACAAGCCGCCGGAGTTTCCATGAGACGACGACGACGACGAGGCGTCGCCGCGCGGCGCGCCCAAGCAGACGAGAC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0197200.1 | 3 | 3081617 | T | C |
| Osa03LNT0197200.1 | 3 | 3082773 | T | C |
| Osa03LNT0197200.1 | 3 | 3083125 | C | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0197200.1 | osa-miR5822 | Translation | 4.0 | 16.807 | 1 | 21 |
| Osa03LNT0197200.1 | osa-miR5337b | Cleavage | 3.5 | 18.875 | 1 | 21 |
| Osa03LNT0197200.1 | osa-miR167h-3p | Translation | 3.5 | 18.759 | 1 | 21 |
| Osa03LNT0197200.1 | osa-miR393b-3p | Translation | 4.0 | 18.662 | 1 | 21 |
| Osa03LNT0197200.1 | osa-miR1428b | Cleavage | 5.0 | 16.827 | 1 | 21 |
| Osa03LNT0197200.1 | osa-miR1428c | Cleavage | 5.0 | 16.827 | 1 | 21 |
| Osa03LNT0197200.1 | osa-miR1428d | Cleavage | 5.0 | 16.827 | 1 | 21 |
| Osa03LNT0197200.1 | osa-miR1870-3p | Cleavage | 5.0 | 15.304 | 1 | 24 |
| Osa03LNT0197200.1 | osa-miR5488 | Cleavage | 5.0 | 20.12 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0197200.1 | 3 | qHEJ-3 | Morphological trait | Shoot/Seedling | RM175 | RM22 |
| Osa03LNT0197200.1 | 3 | S34(t) | Physiological trait | Sterility | nan | nan |
| Osa03LNT0197200.1 | 3 | qOE3-1 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0197200.1 | 3 | qTA3 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0197200.1 | 3 | rn3 | Resistance or Tolerance | Drought tolerance | RM231 | RM175 |
| Osa03LNT0197200.1 | 3 | qtl3.1 | Resistance or Tolerance | Drought tolerance | RM7332 | RM545 |
| Osa03LNT0197200.1 | 3 | qDEF-3 | Physiological trait | Flowering | R518 | C721 |
| Osa03LNT0197200.1 | 3 | QSbr3a | Resistance or Tolerance | Sheath blight resistance | RG348 | RG944 |
| Osa03LNT0197200.1 | 3 | dth3.1 | Resistance or Tolerance | Drought tolerance | RG104 | RZ329 |
| Osa03LNT0197200.1 | 3 | QSs3 | Physiological trait | Sterility | RG348 | RG944 |
| Osa03LNT0197200.1 | 3 | qFDN-3 | Physiological trait | Flowering | RZ329 | RG348 |
| Osa03LNT0197200.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | RG348 | RZ329 |
| Osa03LNT0197200.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | RM231 | RZ329 |
| Osa03LNT0197200.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | RM231 | RZ329 |
| Osa03LNT0197200.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | RM231 | RZ329 |
| Osa03LNT0197200.1 | 3 | nan | Morphological trait | Root | CDO20 | RG409 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)