>Osa03LNT0197800.2

GTCCAATAGCTCGAGATATTAACAATCTCAGTAAATTGATTATTCTTGCCATTATGTACATTCTAAATGCTTCAGTTTACAATGAATAAATGAGATCTGTTAAGTTATTCTCTCCATCTTTTCTTGAGGCTTGATGAACAATACAATTATGTTGCCATCATGCTGAATTGCTGATGATCAGATGAGCTCCAAACAATTTGGTGTAGTGACTGCCATCTCTATTACTACTGGCAGTGAATGCTTGGAAAAGATCTTCTATTTTTGAAATGAAATGCTTGAAAAAACTTTCAGGGTGTAGTCTTCTTTTCAGTTAGCTTCTCCCTCCTGTACCTCTTGAAATCGGCTGCCAGGCCATTGTCGAAATCCTGCTTCATCTGCAGTGCTAGCTGCCTCAGCACCTGCACCATGATCATCATAAACAATCAAAGACAGAATGTTAAGATTTTGCAAAGCAGTATATATATGTTGACTGTTGTTAAATTATTTAAAGCTTTTCATTACTCTTTGGATAGTTTTTGAACAACCAAAGAAACATCCACTCGAGGGATCAAAATAGCTTTCCAATAAAAAATTCAGATACCCATCAGCTAGGGATAAAAACAGTTCTCCAATAAAAAAAATTCAGCTACCCATCAGCTAGGATGAGTCTTTTGACATGGGTCACTTACATGCGGGCCTTTTGGAAATGTGGGACCCATATACCAGTCACTCAAAATCAGAGGACAGAGTCGTGTAGAGGATCTTTCCAGTTTCCATGATACCATCTCTTTCTGCTTGCACAAAAGCAGCGAAGGTGCTGAAAAATGCTCACCGTCTCGCCGACGCCTCTGATGACGCCCTCCGGCACCAGCGCGAGCACCGGCGGCAGGTTGAAGCCGACGCTCATCTCGACGTGGCCCCTCAGGCTCTTCCTCCCCTCCGGCCGCGGGTACAGCGACCCGCGGACGGTCAGGGCGAGGTGCGACGGCATCGCGTTGCTGTCCAGCCCGTCCAGCTTGTAGTCCGTCACTTCCATGAGCAGGAGGCTGGTTGCCTTGACGGGGACGTGCGGCGGGTACTCCTTGCCGCCGGATTTGCTTACGAACCGCATCACGATCACCGGCGACGCCGACAGGAACAGGAACTGGATCGGCAGAAGCTGCACGCTCCATTCTTCATCACTGAGCTTGGTTCTCTTGCGCTTATCAGGGAACACGGCTCCAACAATCCTGGGCCTGTTCTGAAGGTACTCATCGATGGATGCCCCTGGAGTCTCGGTCATGGGGATGTCAGTGTTGAATCTGTAGGAGAAGGTGAACATGTCTCTCGGATTGATCTTCTCCTTCGACTTCGACTTGTTGCCATAGGAAGGAGTCTTGAGAGTACATGTCGTGAGCATCCTCGACGACGGTGAAACACCCAGAGGAAGATCATTTCTTGATCTTGATCTTGATATTTCTCCCACTGATCTGGATGGTGTCACCCTGGTGCAGATGCACTGCATGCTCCTGCTACTACCTGCAACACACTGGATGGATGGCATGATGAGATGAGCTGACACTTAGCAATGCCATCTTCTTCCCTGTAATGGTATCCTTTCTCTTCTTTTTCTTCAGAGATGGAAGTTGT

Explanation	CPC Score
noncoding (weak)	-0.790642

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0197800.2	3	3684215	G	A
Osa03LNT0197800.2	3	3684577	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0197800.2	osa-miR5512b	Cleavage	4.5	18.54	1	21
Osa03LNT0197800.2	osa-miR818f	Translation	5.0	9.867	1	21
Osa03LNT0197800.2	osa-miR7693-3p	Translation	4.5	13.898	1	22
Osa03LNT0197800.2	osa-miR7695-3p	Translation	5.0	22.319	1	21
Osa03LNT0197800.2	osa-miR393a	Translation	5.0	21.733	1	21
Osa03LNT0197800.2	osa-miR167d-3p	Translation	5.0	20.249	1	22
Osa03LNT0197800.2	osa-miR417	Translation	5.0	20.847	1	21
Osa03LNT0197800.2	osa-miR530-3p	Cleavage	5.0	18.182	1	21
Osa03LNT0197800.2	osa-miR1847.2	Cleavage	4.5	23.6	1	24
Osa03LNT0197800.2	osa-miR2868	Cleavage	5.0	18.185	1	20
Osa03LNT0197800.2	osa-miR2927	Cleavage	5.0	23.161	1	23
Osa03LNT0197800.2	osa-miR2928	Translation	4.5	15.997	1	20
Osa03LNT0197800.2	osa-miR5073	Translation	5.0	15.93	1	23
Osa03LNT0197800.2	osa-miR5161	Translation	4.0	20.319	1	20
Osa03LNT0197800.2	osa-miR5339	Translation	5.0	18.238	1	21
Osa03LNT0197800.2	osa-miR5512a	Cleavage	4.5	18.54	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0197800.2	3	qHEJ-3	Morphological trait	Shoot/Seedling	RM175	RM22
Osa03LNT0197800.2	3	S34(t)	Physiological trait	Sterility	nan	nan
Osa03LNT0197800.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0197800.2	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0197800.2	3	rn3	Resistance or Tolerance	Drought tolerance	RM231	RM175
Osa03LNT0197800.2	3	qtl3.1	Resistance or Tolerance	Drought tolerance	RM7332	RM545
Osa03LNT0197800.2	3	qDEF-3	Physiological trait	Flowering	R518	C721

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus