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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0198100.2

GCATTTTAGAATAAACAGTAAAAGAGAATGGATAAATCACATGTCCTGAAGCTGTAAATTTCTACGAAGTCCTGAGCAGCTCAATTTTGGAGAGGGTAGTAGTGTTGTTCCCTTTATGGTTCATCTGATGCATGAAGAAGGCAAGTTCAATTTCTGGTTCAGTAACTCTTGTTGTTCCTACTGCTTCCAGGAAGCAGAACCGCCAAGGATTTTCTTGCTTGATGACTGTAAAGAGATGAAAGTTCAAACTGGTCATTAAAAAAATTGTGTGCAGATAAGAGTGGTGTTGAGAAGTCAAGTTATCAAAGTAGCATTTTGTCTTCGTTCCAAAGGAGCTAACTCTGTTTTTAAATATCTGATCTTTTTTTCATAAACTCACTAATACATATCACTAATACGAGGGAAATTGTAAGTGAATAGTGAATGAAGATAAATAATGGTTTGAGAGAGAGATAGAGGGTGAACTCACCAATATATCCCAACTGCATACAATCATCAAGGGCAATGCGTGCATGAGTGATAGAAATCATGGCAGCAAGTATCATTATTGTAATCACATTCTGCATGGAGAAATGTATTTTTTCCAAGAATATAAGCCTATTCCTCTGCTAGTAAAGTTCCCATGTCAACCTATTTTACTTCAAGATGAAGCTTTACTGACGATCCAAGTCGTTGAGGGGATCTAAGATCCAGAATCCATAAACACTCTCCAGAACACATGCATTGCAGGTGAGGAGCCGGACGGGACATTTCGCCGAGCACCCCGCGTTCATTGTACTCTCTCACGGGATTCACCTGCTGCTCCCCCACCGGCGAGGAACTCCATAGCTGCAGCTCACCCCTGCGATGCAGAGGGGATCGGTGGAGAAGGCGATGCAGAGGACGGCGCGGTGGCTACCTAGCGACGGGAGCACCTCGTGCGGCGGGGATCGGTGGAGCAGAACGGCGGCGACGACCTGGTGACGGGAGGACCTCGTGCATCGGGGAGGCGGAGGATCGTGGAGAGCGAGCTGGCGGCGGGGATCGGTGGCAGACAGGCGATGCAGAGGACGGCGCGGCGGCTGATACGGAGCGGAGCGCTGATGGCGGAGGTGCGG

Coding Potentia
Explanation CPC Score
noncoding -1.08689
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0198100.2 3 3761911 A G
Osa03LNT0198100.2 3 3761923 T C
Osa03LNT0198100.2 3 3762157 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0198100.2 osa-miR6248 Cleavage 3.5 17.693 1 21
Osa03LNT0198100.2 osa-miR156b-3p Cleavage 4.0 16.692 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0198100.2 3 qHEJ-3 Morphological trait Shoot/Seedling RM175 RM22
Osa03LNT0198100.2 3 S34(t) Physiological trait Sterility nan nan
Osa03LNT0198100.2 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0198100.2 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0198100.2 3 qDEF-3 Physiological trait Flowering R518 C721
Osa03LNT0198100.2 3 rn3 Resistance or Tolerance Drought tolerance RM231 RM175
Osa03LNT0198100.2 3 qtl3.1 Resistance or Tolerance Drought tolerance RM7332 RM545
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus