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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0198400.1

TTTCCACAGGATCACGTCGTCTGTCTTCCAGTTCCACCCCCCTCAATTCATCCCATAGCTGAAAGAACTCCCCCAAGGCTGCGTTCGACAGGGAGCCCTGAGGTCCTTCGTTCACCGTTCGGAACTTTACAATTAGAGATAACTTACCTGCATCGATATTTGATAAAATTGGAGTGCTTGGCAGATAACTATTATGTTCCAAACTTTGAGCTCCACTATGTGCATGGTTGACTATCTCATGAGACAACCTGAGGTAACAAGTTCTTTTTGCCGGGTCGGCCGAAAGGTTCGGTTGACCAATTTCATTAAGATTGGGAGTAAAATAAACGAAAATTGTTTGCTTACAACGACAGAACGCTGTCGCAGCGGCAGTGAGGCAGAGCCTTCCTACCATTCAGCGAAAACAAAACAGAACACAACACAGACTGATAGGTCAGCTATCGCCGTTGCCGTTGTTGCTACATTCAGCGAAAACTCCCGCCATCTTCCAGATCATTAGTTCCTCCTTTATGTCATGCACTAGCTGTTCAGGTGTTCTTGATCTGTGCTCGAAAATCCTCCCGTTGCGCTCTTTCCATATGAACCAGCATGTGAGCATGAAAACAGTGTCGAAGAGCTCCCTGTAGCCCGTCCGGAAATGCTGCCTAGCTTCCAACCACCAGGCTGCGAGACTGTCGCTTCTTCTTTCAGGCAGAGGAAAGTCGATGGAGATCCAGTTTTTCATGATCGTCCAAACTCGCCCTGTAAACTGACATGAGACAAATAGGTGCTGGCAGTCCTCCTGTTCTCGCTGACATAGAGCACAGCTCTCCTCATGTGGCCGTAAGGCATCGCCCCCTTGCAGCAACCCAGAGGAAAAAACGAACCTTGGCAGGGGCTTTGGTTTTCCAAATCAGTTCTCCATGTGGACAAGCTTCTCTCGCCATGAAGAAGAGATCATATGCCGATGACACTGAAAAAAGACCGCTCTGGGATGGCTTCCATCTGATTTCGTCTTCATCATGATTGAGAGTGATCCATCTATTGTTGGTCATGGCTTGGGCCACCGTCAGTCTCGACCGTCCCACAAATGAGAAAAGGATTGGCCATTGCCAAGAGATGCTTCCTTCGTTCAGCCAGTTATCAGTCCAGAACTTTGTGTTCTTACCATCTCCAATATCAGTAAAACACACTACCTCCGTCCCAAAATGTAAACATTTTTAGCTATGAATCTGGACACATAGGACACATGTGTGTCCATTGTCCAGATTCCATGTGTTTCCAGATTCATAGCTAAAAATGCTTACATTTTGGGACGGAGGTAGTATATACTTAAAAAAATGTGGAAAGTGTAAAATCAATCAAACACACACTGTTGGTGCACAGAAATCATCACGGAAGAAAGTTCTCACAGTAGAACTATAGAAAAGAAAACTCACCTTGCACGTTTGTTGGCAGTTGCACACGGATTTGATTCAGCCGACACATGGATGTGTTCACAAAAGGGAGAGAGAATTAGGTGGTCAAAACTCTTTGAAATAGCAACTATTAGTATAAATTACAGTACTTACTGGTGCTACTGTTATCTGCTTGTGAGATCTGGCAATAAGCTGTTTCGAGACCTTGTTTAGATTTGGGGGGTGGGAGGGGAGCGCAGATGTACGAGATGGTGGCCTGCACCGTGTGGCCGTCCCTCGACGGTGTTGGCCAGGATGACCGAGGCCGGCCATCGGGTAGCGCGGCGGCGGGTTGAAGGACTCATCGTGGCTGGCACTTGCAGAGACGGTTGGCGGATTTGGGGTTCTGCTCCCTTCCGAAGCCCTCGACAAACCTTCAGTTCTTCATCTCATCGAGCTTGTATTGATGAACACGATCGATCGGCTGGAACCGGCGGGTTAGGGGCGGGGCATCCTGAACTGCAAGTACTCAGCTCAACATCGAGATGAGGCTTTAGCTGCAAGTACCCAGGGCGTCGGTCGTGGACACTGGACAGTCGCCGCGACCTGGAACACGCTCGGGGGCTCTCCGTGACTCCGACCGAGGACCAAACTACCAAAGCCCCACTCCGAACAGAACCAACAACCCGGCCGACAAAAGTCCTAGACGGACTGCGGCGCGCGGCAAGCCTGTAGCTCGTCCTGAGCCTTTACCATCATCGTGCATGTGGTGAATACCGTGTTAACTGGAGTACTACTAGGAGAACCATAACACTATACTACTACTACGTGATGTTTCAGAA

Coding Potentia
Explanation CPC Score
noncoding -1.26767
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0198400.1 osa-miR6248 Cleavage 4.0 6.277 1 21
Osa03LNT0198400.1 osa-miR164d Cleavage 4.5 21.432 1 21
Osa03LNT0198400.1 osa-miR1425-3p Cleavage 5.0 21.248 1 21
Osa03LNT0198400.1 osa-miR1436 Cleavage 2.5 9.901 1 21
Osa03LNT0198400.1 osa-miR1861c Cleavage 4.5 22.477 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0198400.1 3 S34(t) Physiological trait Sterility nan nan
Osa03LNT0198400.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0198400.1 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0198400.1 3 qDEF-3 Physiological trait Flowering R518 C721
Osa03LNT0198400.1 3 qtl3.1 Resistance or Tolerance Drought tolerance RM7332 RM545
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus