>Osa03LNT0199300.1

GGAATGAAAATATTCTGCATTGATTCAGAAAGGAGGATGCTGCTAACCGCCCATGAAATTAAGTGTACATCAGTTATTCGTGATGGCTGATGGACGTATTAGTGTATTACTCCTTGTTTCAGCAACACCAGCGAAATAAACAGCATACTTATTGAACACATCAATCAACCAAATTCAGAACCTGAACAGGAAAAGCATCCCCACCCCAAGTTGTGGCCATCACTTGTCCATCCATATGATGCATCTCAGGCTCTTTCCCTGCAGAAGCAAATCGAAGGCTGTGTTTATCTCCGTCAGGCCTACCTCATGAGTGACCAGCTTCTCCAGTTCCAGCTCCTTGTTCATGCATTTCTCGGCGAGGATTGGGATGTCAGTTTTGGGTTTGGCCCCACCGAAGAGCGATCCCATGACGCACTTGCCGAACAGAAACTCGAAGGACGGCAGGCACAACGGCTGGCTGTCCTTCTCGACCCCCAGAATGATCGTCTTGCCCCGTCCTGATTTGGTGCTTCTGACTGCCTCAGTCATCACCGACGAGATACCGATGCACTCGAAGCTGTAGTCAGCGCCACCGTCTGTCATCGCATTGATCACCTCACTGACGGATTTGTCGCCGAGTTGGGATGGATTGACGAAATCAGTCACACCGAACTCTTTTCCAACTTCCTCTTTGTTAGGATTCAAATCAACACCGATAATCTTCGTTGCTCCACACATTTTTGCCCCTTGCACTACCGCCAATCCGACGGATCCCAGCCCGAAGACAACCACCGACGAACCGGGTTGCACTTTGGCCAACCTCCATGCTGCTCCTACCCCGGTGCCGCCGCAGCAGCCGAGGAGGCAGGCGATTTTGGGCGGCACGGCGGGGTCGACCTTGACGACCTGGTTGACGTCGACGACGGTGTACTGGCTGAAGCTGGTGACGGCCACCGTGTCGCTGAGCGGCTTCCCTTCGCCGTCCCAGAACCTGGTTGTGCCGTCGCGCCGCATCCCGGGGCCCATGGTGAACGGCACGGCGGTGCACTGGTTCGTCCACTCCGCCGCGCAGCTGGCGCACGAGTCGCACTGCCCCATGAACGTCGGCACCACCGTGTCCCCCGCCGCGAGCCCCTCCACGTTCTCCCCCACGCTCTCCACCACCCCGTAGGCCTCGTGGCCCAAGATTCTTGGAAAGGCAGGGTCTACCTTGTGCCAGAGGGTGACATCGGTGTGGCACAGGGAGGTGCAGATGATCTTGATGCGGATCTCGTAGGCTTTCGGAGGATCGACGACGATCTCCTCGACGATCAGTGGCTCACTGGCCGCTCTACAGACCGCCGCTGCATCGTCGTCGTCGATATGTATCAATCATATATCATGCGTGAGGAATTGAGTAGTAGTAGTAGTAGTACCAAGGAGCTATGCAGATCTGATCTCTGTAAGTGAATTGTGTACCTTTGCAACGGATGGGCTTCAGGCTCTGATCTTCCATTGCGGCTGGATGGCGAGCTTAAGCAGCACTGCAGCAGTGT

Explanation	CPC Score
noncoding (weak)	-0.740329

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0199300.1	3	4684216	A	G
Osa03LNT0199300.1	3	4685078	C	T
Osa03LNT0199300.1	3	4684013	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa03LNT0199300.1	DTM_#DNAt_MULE_japo_Os0054	Chr3	-	4683972	4684154	182

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0199300.1	osa-miR5792	Cleavage	4.5	17.501	1	24
Osa03LNT0199300.1	osa-miR5832	Cleavage	4.5	24.193	1	21
Osa03LNT0199300.1	osa-miR818f	Translation	4.0	24.227	1	21
Osa03LNT0199300.1	osa-miR159a.2	Translation	4.0	19.229	1	21
Osa03LNT0199300.1	osa-miR1429-5p	Cleavage	2.5	22.206	1	21
Osa03LNT0199300.1	osa-miR2866	Translation	4.5	24.749	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0199300.1	3	S34(t)	Physiological trait	Sterility	nan	nan
Osa03LNT0199300.1	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0199300.1	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0199300.1	3	qtl3.1	Resistance or Tolerance	Drought tolerance	RM7332	RM545
Osa03LNT0199300.1	3	qTNL-3	Morphological trait	Culm/leaf	C563	R518

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus