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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0200000.1

GGAACACTGGTTATATCAATCAGTTCGTGTGTGGTCAAGAACTGCCTCATCACACATTAGAATGGGAGCAAGTTATACAATGGGATATAATTTCCCGTATGTTCTATCAGCAACACTTACAATATTGCAAAAGCAAGTACAAGGTGTATCTGTGAATTATTGCTCGTAACGTTTAGTATAGTGATCAGCAACATGGGATAAAAAGAAAAAGAAAGGCAAAACTATTGTTAAGCTTCCAGCTCCAGGAGTGGCTTTCTACACATGACATGTTGTCTTCTCTATCTCAGTATCAGCTCTCATTTACCAAAATTTTGGTATTTCTTCGAGAATTTATAGAATGCTTTCACAATGGCGCCATATTTCATTGAATTCAGTGGTCCCATATGCATTATCTCAGTATACCGCAATCTCCATGCAGGAAAACCTAAATGGCATCTAGCAGGGCCATACACAAGAAGAAGATCAGGTTCTGGTCCACCACAACCTATTGCTTTCAATGCACCGGACATGTCAGCTTCTGTAAATACTATTTCACCATTTCCACAAGTATTCCTATTGCCGTTCACACAAGTTGAGCAAAGTAAGCTGGCTGCTTTAGCAATCCCATCCTTGCCATCAGAACCAGAAATACACTCTATTGTCATCTCTTTATGACAACAGGTCAAAGCTTTTGTATTTGCACCCACATCCAGATATTTTCCTGAATTCCCATATCTTGAACCATTCATAGCAGGTGCAAATGTTTTCTTCAGCACTCCATCAATGTCATAAAGACATACATACTTCACACCAACATTTGAGAGCCAACATAAGAGCTGATTGATCTTTGCAACATTTTTAGCTTCTCTGCTATCTACCACAACAGCCAAGTGTTTGAGCCTATCCAGTTGGAATTTCCGATACTTTGGAATCAGCCCGAATGAAATGAGATAGCATTCTATACTGTAGATCAGATCAAACCATAAACTGCAAAGGCTGATTGCTAAGTGGACGATGAACCAAAGCAACCCCAGAATCAGCTTGATAATCACTGATGGTCGAGACATATGTGGAGGAGACTGATTCATGAATAGGGGAATCTCATTGGCCACAAATGCCGCCCTGCTGCATGCTACCGCTCGAACCGAAGGCCGCGCCGCTGCCGCGCTTCCGCCGGTGAGCCGGTCAGCGTCGCATCTGGTGCGGGCGGAGGCGGAGGCGGAGGCGGCTGCTGCGGCCGGTGATGGAGAGAGGTTTGTTTTCCCCAATTCACTCACGATCTGGAGGAGGACTTCGAAGACGAAAGGTGGAGTAGAAAAATACGAAAAAT

Coding Potentia
Explanation CPC Score
noncoding -1.09517
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0200000.1 3 5089093 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0200000.1 osa-miR5539a Translation 4.0 13.696 1 22
Osa03LNT0200000.1 osa-miR5539b Translation 4.0 13.696 1 22
Osa03LNT0200000.1 osa-miR1428e-5p Translation 5.0 14.686 1 22
Osa03LNT0200000.1 osa-miR1428f-5p Translation 5.0 14.686 1 22
Osa03LNT0200000.1 osa-miR1428g-5p Translation 5.0 14.686 1 22
Osa03LNT0200000.1 osa-miR2928 Cleavage 4.5 18.077 1 20
Osa03LNT0200000.1 osa-miR2275c Translation 3.0 19.401 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0200000.1 3 S34(t) Physiological trait Sterility nan nan
Osa03LNT0200000.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0200000.1 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0200000.1 3 qTNL-3 Morphological trait Culm/leaf C563 R518
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus