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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0200700.1

GGAGAGTACTAGCCTTCAGTGCTTCGATTGCTGCTGACAAAGCACTTGAATGATGTTTTTCAATATGAGACCACTCGTCTAGATAGTATATCTGTCTTCTAAGAATAGCGAACAGTTTGAGCTTTTGTTTTAGAAGCTGGAGTTTGCTCCTTTTAGAACTGACATTGTCTCGTAATTTTGATATTTCCTTCCATGCACTGTGCAGAGTTTTCTCAGCATTGAAGCTCTGCACCAGGAGAGCTGCATCTGTCCGAGCATTGATGCATCGCCACTGCAAATGTCGATTATCGA

Coding Potentia
Explanation CPC Score
noncoding -1.39314
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0200700.1 3 5548730 G A
Osa03LNT0200700.1 3 5549384 T A
Osa03LNT0200700.1 3 5549824 A T
Osa03LNT0200700.1 3 5549969 C T
Osa03LNT0200700.1 3 5550209 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0200700.1 3 Gy3a Others Others RG266 C63
Osa03LNT0200700.1 3 nan Morphological trait Dwarf RG100 RG450
Osa03LNT0200700.1 3 S34(t) Physiological trait Sterility nan nan
Osa03LNT0200700.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0200700.1 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0200700.1 3 qTNL-3 Morphological trait Culm/leaf C563 R518
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus