>Osa03LNT0201300.2

AGAGATGAAAACAATGGACCATTATGCTAGCAGGAAAATGTCACGAGGTGCTATACAAATCATGTGCTTAACTAGTCTTCTGGTAACGCTAGTAGTACTAATACAAAGGGTCCTGCCATGGCTTCGACCTACAGTATCATCAGTAAAATATGCTAATTTAGGCTGCAGCGATACAAGCGCGAGAACAAATAAACAGACTTTCGTAGCACCCTCTTGAATCAGTCTACAGATCAGTAGTATGTTCCTGTTCCATAATATGGTTGCTGAGCTGCAACAGGTTGCTGAGGGTAAGCTGCCGCCGGTGCCACTGCGGGTGCTGGTGCCGCCACCGCCATTGCTGAAGGTTGTGCATAGGTTTGTTGTGTGTAGGCCTGAGCGGGGTATGTTGGAGGATAGGCGCCGTAAGCAGCTGCTTGAGGAGCAGATTGAGGCATTTGATGGCTGTAGTCGTAAGTTCCATACGCAGGATAAGTGGCCTGTGGTGCATAAGCAGCTCCCCATTGTTGCCCCGATGCTTCAGATGTCGCTGGCCAAACTGGAGGATTATGAGCATTTGGATCAGTTCCCACAACTGGCTGAGTACCATCCCCAATCCTAGCCAATTTATCTCTGTCTGACATGATAACATCATCAGCTCTTCGCTTCTTTGATGACAGCATGCTTCTCTTCCGCGAAAAATGAGTAAGATGCCGATTGGTAGCCTTCTTGATCGCTTGTGCATCCCCAAATAGATCCAAAAACTCTAAAAATATGGAAGATATGTCTTCCTTGTCAGCTAGACTTGTGACTTCCCCTTCGGTTGGTTCAGCTGTAAGAAACTTCTCGACCAGTGAATCTAAAAATTCAATACGCTTTTCAGATGGAAGGATCGACTCTAGTTGCATGATAGCCTCAATAATTGATTTTGTCAAATCGCATTGTTCGAGAAAACCAGTTAGCGTCTCCTTTGCCTTCTCGATGTCACCGATGGCCAAAGATAAGAATCGTGAGTACTGAATCAGCAAAGTAGGCAAAATCTGGCTCCGATCCTTTTCCTTTTCAGCGGCAATGGCCTTCTCATAAATTGAGCAAGCAGATTCTTTATCTCCCAATCGGTGCTCCATATTAGAATGCTTAACAATGGCTTCTAAAAGGCCAGGGTACAGATCAGAATAAAGATGCTGGTATTCTACACGTGCTCCAGAGACATCTCCACTAAGCTCCTTGAATCTTGCACTGAACAGATGGATCTCTGCCTGCTTGACAAAAACATGAGTGGCACGAGCCAGAGCATTGTTTGCTAGTTCTATGCTTCCTCTAGCTTCCATGCATAGCACATAACGGATCCAAAACTCTGAATAACTAGCACATGCAATAACACATCTTTCATACAGCTTGATAACAGGTTACTCCATTAGCTGATTAGGGAGGCCCCTCCATAAGGAGGGACCATCCTTGCCTGATAGATAGATGGTTAAGAAGGAGAGCATTAAGCAATTACCTGCATATATGAGATTAAAAATTCAAACAACTGATATTTGGTAGCACATATCATTAACCCAGAACGGCCACTGACAAATGAAAGTTTGGAGTACTTAGCCTCATCGAAACCAAACATTATGTCCATGCTCTATCCTCAGTTCAATATGCCATTACAAAGGAAGCTTCGTCCAAATACTAGCCGTTAAAGCATATAATGGAGCCAATAAGACTAAAATTGTAAGTTACAAGACTCCAGGTACTGCATGAAGTCTACTGAATGAAAAAGTAAAGGACTATTTCCATTGCAAAAGCATACCTTATTTATGTCTTCTTCTTTCTCAATAAGATCAAGATAGTTGTGCCAATTTTCAAGCTCTGGATTGTCAAGGGGCTTGACATGAAAATATGGTCTTCTAATTGCTAGCTCAAAACCAATAATCTTAGACTCATACTCTTTAGCCTTGTTATACATTTCTTCTCTAACAGAAACGTATTTTGCCAGGTTATCTGCCTCTGTTGAACCTGAAATTTCGGGTTGAGCAGACATATCTACATCACCAGGTTGTGTCTCTCCATCAAGCGTCTGAGCAGTGTTCTCGGCAGTAACAGAATACATGGCAGCTTCCTCTGAGGTAAGTATTTCTGATAAACTTCGTGTTGCGGCCAACTCCTTTAGGCAATGGAAATACCGATCAAGCTGTGTTATAGGATGCTCCAATATTCTCGTATATATGATGGCTAGATGACTCCATGCCTGCAGTGATTCTTCGTACTTAATGTACTCATCCCACAAAATATTGGAACGATAGTCTGTTCCAACATATGCCAAACCCCGTTCGAACAGTCTTCTGATGATATCTGGGTCTTCATATGTAGAAATTGCAAACTGACAATAGTTATACCAAATGTCCACGGAATAAGTAACAGCAAGAACTGCACGTTCATAAACCTCTATAACTTTTGTGACACCATCAAGACGTGCTTCATGATCTGCATATTTCTTCCAGTATCCAAAGCAGAGAGGGAACTCCGCAAGGAATGCATCATACACTTTTCTTAGTTTCAAGATATTGCTCTCAGCAGTTTTCTCTGTCTCATCAATAAGCGCAGTCCAAGCATTGAAGTCTAAGCAATTCGCTGTAACGGCATTCCACAACCTTGCTTCTTCTGCTGAAAGCACAGCATCCGCATAGGACTGCTCGGGAACCGGCTCACCCATCTCGTTTGTGGCGGCGCCGTTCTCTGCAGCCCCCGCAGACTGGTAATCTACCACCTGGCCCGATGTCCCGTTTAGCGGCGCGTGGTCGGCGGGGTACACGGAGGCATCCGCTCCCTGAGCGCCATCGGCTTGCGGGACGGAGCTCGGATTCTGACGGAATCGTGAGCGCCCTGGCCGGCGCTTGGATTCTCCGACGCCGCCGCGGCAGCAACGCCCTGATCTTGCTCCATTGCGGCTGCGGACCGTGGCCGACGAATCCCTCTCGCCCCTACGGGGGGGAACAGTTGGCGAAGGCTGATAAAAAAAATTACACCAAAAAAAACCACCAAAAGCGAAGCCGTAAAAGAGCTAGAACAAGAGAGGATAAATCACGGAGCACGCACCGGCGAGCGGAGGCGCGCGCGTCGGGGAGGATGAGGTGCCGAGGGGTCGCCGACGAGCGGGCGAGGGCTTCGGCGCCGGCGAGGCGAGGCGGAGGCGGAGGGTTAGGGTTGGAATTGGATCGGTGGGAGGCTATCAGTATCAGCGGCGTGGGAAAGGT

Explanation	CPC Score
noncoding (weak)	-0.577545

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0201300.2	3	5762642	A	G
Osa03LNT0201300.2	3	5761461	G	A
Osa03LNT0201300.2	3	5762043	A	G
Osa03LNT0201300.2	3	5762369	A	T
Osa03LNT0201300.2	3	5762526	G	A
Osa03LNT0201300.2	3	5762571	T	C
Osa03LNT0201300.2	3	5763832	T	A
Osa03LNT0201300.2	3	5765666	T	A
Osa03LNT0201300.2	3	5765758	T	G
Osa03LNT0201300.2	3	5766394	T	A
Osa03LNT0201300.2	3	5765151	C	T
Osa03LNT0201300.2	3	5762808	C	T
Osa03LNT0201300.2	3	5765438	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0201300.2	osa-miR812q	Cleavage	5.0	12.466	1	24
Osa03LNT0201300.2	osa-miR5794	Cleavage	4.5	18.22	1	21
Osa03LNT0201300.2	osa-miR5822	Cleavage	4.5	20.88	1	21
Osa03LNT0201300.2	osa-miR5079b	Cleavage	4.5	14.379	1	22
Osa03LNT0201300.2	osa-miR160f-3p	Translation	5.0	15.277	1	21
Osa03LNT0201300.2	osa-miR168b	Cleavage	5.0	21.574	1	21
Osa03LNT0201300.2	osa-miR1846a-5p	Cleavage	4.5	13.066	1	21
Osa03LNT0201300.2	osa-miR1846b-5p	Cleavage	4.5	13.066	1	21
Osa03LNT0201300.2	osa-miR1846c-5p	Cleavage	4.5	13.066	1	21
Osa03LNT0201300.2	osa-miR2092-5p	Cleavage	5.0	13.792	1	21
Osa03LNT0201300.2	osa-miR2876-5p	Translation	4.5	16.962	1	21
Osa03LNT0201300.2	osa-miR2876-5p	Translation	4.0	13.681	1	21
Osa03LNT0201300.2	osa-miR5079a	Cleavage	4.5	14.379	1	22
Osa03LNT0201300.2	osa-miR5339	Cleavage	4.5	16.926	1	21
Osa03LNT0201300.2	osa-miR5492	Translation	4.0	13.148	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0201300.2	3	Gy3a	Others	Others	RG266	C63
Osa03LNT0201300.2	3	S34(t)	Physiological trait	Sterility	nan	nan
Osa03LNT0201300.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0201300.2	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0201300.2	3	qTNL-3	Morphological trait	Culm/leaf	C563	R518

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus