>Osa01LNT0017500.1

TTCAGTGGGACAATTGCAAAGTCATGTGAAAAAACATAGGAGCGTGATAGGAAATGTATAGTTAGCAATCAAAAGAAGAAGGGAATTCTTGTAATCCTCCCGGAATAAACCTGCAAAGAGAGGTAATCCTGCGAAGAGATTGAAGGAAGTGATTTTGCACGGGCACAGATAGTGCTCTAAGGGAGAGACACACAAAATATGGAAGAGAGAAAAGGATGGGGGTACACACCATTAAAAAGTATAATCATGGGGATGTTATAAACTATTGAGACTATTCGAAACATGGCCCAATCCGCATGAATCAAAATACAGATTATAAAGGGAGATTTATATATTTAACTGGACTGAGGATGAACCTACAATGGAAAAAATGGATATCGGCATGGAAAGGAACAGCCTCCTCGTAGCAGAGTAATGGATCCAGGAACATGCTTATTTCGCAGATCAGAAACATCAACCTAGGTACCCACTTCTCTTCTTCAATCAAACTTCTCTTCTTGAATCAAACTACTCCGGCATGAGTAATTAGCAGCACGCACCGGCATGAGTGTCGTTATATATAAAAAGATGAGAAGGGGAGGAGGCAAATCAATGCAAGCAGTGATTATTAGAAGGTGAAGATTAAAAGGCGGTAGTGGGCAGCGGGCAGCCAGCTAGGCGCGAGCGCAACCCTTCGCTCCCTG

Explanation	CPC Score
noncoding	-1.27258

Transcript ID	Chromosome	Locus	Ref	Alt
Osa01LNT0017500.1	1	14457488	T	C
Osa01LNT0017500.1	1	14457819	G	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0017500.1	osa-miR5079b	Cleavage	4.0	17.683	1	22
Osa01LNT0017500.1	osa-miR535-3p	Cleavage	4.0	14.336	1	21
Osa01LNT0017500.1	osa-miR5079a	Cleavage	4.0	17.683	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0017500.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0017500.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0017500.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	RM5
Osa01LNT0017500.1	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0017500.1	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904
Osa01LNT0017500.1	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0017500.1	1	nan	Morphological trait	Root	RM23	RM306

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus