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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0203300.1

GCCGGAGAAGACGTTTACATGGAGGTCAAAGTTTGTTGTTGGGTAAGTATATGTCGCTCGAACGACTATGCTAACGAAGTTACAGGCCAGCAGATGAAATGCTGTTTCAGCTTCTTCAGATTTTTCTTTTCTTAACTAAAACGGCAACACCAAGGCTACATAAGAGCTACTACAACACTTGAATACAAATTGGGTCGGTTTTACACTTCTACGAATGACCATCATGCTTCCCAAGCTCGCTAGGCGGGGGTAAGAGAAGTGCAAGGCGCTGCTTGTATCTTTCAATCCGTCGGAGCCGCTCCTTTTGCAAACCAGCACGGATCTTTTTTGCACGCTTCACATGCTGCTTCAGCAAGTCACTTGCAGTATATTCACCGGTTTCATTCTTCTCTTCCTCTGAGTTCTCTTTCTCAGCATCATTGTCCTTTTCTGATATCCTAGAGTCCACGACTGAAGCAGGCAGTGGTCTTGGAAGAATTGGTGCACCAGTTCCAAAGCTTGGCTGACTTTCATGTGGAACTCCATTACGCACCCATGATCGACAAAGTGCATACAAGGATCCTGACTCACTATCCATCAAGTTAACTTTACGGTCATTAATAACCACTGTTGTAGAGTCCTCCTTGCTCCTTTCACTATCTTTTGAGTTGTTGATCTCTTGAGGAGATGGAGTTACAGCTGGTAGTGGAATGACCTTGGGCTGTGCTTGCTGAGCTATAGGGACTCCTCGGGGAGGCTGCTCGGGGCGCGACGACACACCTGCCACCACCGCCCTCGGGGCGGCGGGGAACGACCGGCCATGCGTGGGCGCCAGGGGATGCTGCGGCTGCACTATGGGCACCGCGACGGCGTGGGCGCGAGGGTACCCTACGGCGACCGCGGGCGCGCGGCGGTGGTTCGCGGTGGCGGCGGCCGCAGCCGCCGCGGCGGAGGACGTGGCGACGGGATAGAGGATGCCGTGGGCGGCGGTGGCATGGTGGCTAGGGTTAGGGTTCAGCGGGCGGCCGGTGAAGGGCGGGGGCGGCGGTGCCGGCGCCGGGGACGCGGCGGCGCGGCGGGGCGAGGAGGCCGCCGCGGCGAGGAAGGCGCGGGGGAGCGGCTGGGGGGAGGCGGCGGCGGCGGCCGGCGCGGGCGGGGACGTAGCTGGCGGGCGCTGCGGCGGTGGGGACGACATGTCGGTGAAGTGGCCCCCGCGTGTGGGGCCCCTTTCTTTAATGGATTTGAACCGGATTCGTCGCGCCTGTTGTTGGCGAGGGGCCGAGGGCGCGCCGCGCGCGGGCGGCTTCGCCAAATCTCGTCAAATTCGAGGAGCACGGCCG

Coding Potentia
Explanation CPC Score
noncoding -1.055
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0203300.1 3 7111531 A G
Osa03LNT0203300.1 3 7113234 T A
Osa03LNT0203300.1 3 7113517 T G
Osa03LNT0203300.1 3 7113721 A C
Osa03LNT0203300.1 3 7113987 C T
Osa03LNT0203300.1 3 7114423 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0203300.1 osa-miR395u Translation 5.0 18.783 1 21
Osa03LNT0203300.1 osa-miR169p Cleavage 5.0 20.26 1 22
Osa03LNT0203300.1 osa-miR2869 Translation 5.0 20.817 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0203300.1 3 Rhz2 Others Others OSR13 OSR16
Osa03LNT0203300.1 3 S34(t) Physiological trait Sterility nan nan
Osa03LNT0203300.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0203300.1 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0203300.1 3 Gy3a Others Others RG266 C63
Osa03LNT0203300.1 3 qTAA3-1 Morphological trait Shoot/Seedling C316 C63
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus