>Osa03LNT0203500.2

GCAGCAAGATTTTCTTACTTTTATATATGAAAACGGGTGCATGCTTTTGCAACACAATTGTCCTTTTCCACCACCATTATATTGCTAATGTTAACAAGGTTCAGGAAGCCTTCTTACATTTGTACCTCATGGCACAGAACACAAAGGCCAGCATATTCAAGAAACACAAGCCAGCCATCATCCAGAAGAACCGATCCAAATGCCCTTCGTTCAAGTTATCAGGTATCCATCCAGGACTGCCTTCTCTGGCTGTGAACACTGGCACAAGAGAAACGATAAACGAGCTGAGGTAACTTCCTGCCGAAACGTTAGCAAGTGAGAATGCGAGACATAAGCTTCTCATGGCGTCCGGTGATTCCTGGTAGAAAAATTCAGTTAACCCAATGTTTGAGAACACCTCTCCCACGCCTATCAGGAAGTACTGGGGTCCCTGCCACAGGATGCTCATTGGAACAGCCACCTTCCTGTGCACCAAACCTTCATCCTGCGCAATCCGCAACCGATTACTCTCCACCAATGCTGCTGATACCATGGAGAGCATGGAAAAGAACAGGCCGATCCCCATTCGCTGCAGTGGAGTAATGCCATTTGCTCTGCCAGTGAATTTTCTGAACACTGGAACAAGGACTCTTTCATAGACTGGAACTAGTATAAGGACAGCAATGACATCAATGGATTGGAAGGACGCCGCAGGTATTTCGAAAGAGCCGATGTGTTTCTCCATCACCATCCCCTGTTCTATGAATGTCGAAAACATGTTGTCCAGAACTGCAGCAAATAATATCATCGTTGCCCAAACGGGGAACATCCTGATCAAAATCTTCAGTTCCTCCACTTGAGTGACTGTGCAAATCTTCCATGTGTTTAGTAGGCCATCAGATTCAAAATCAGATGGTGTCACCATTGCAGCTCTATCAAAGAACTTAAGTCCAGTTGTATGCTCCAATTTTCGGCTGCCTTCGATTGCTGAACTCTGCCCCAGAAACTCATAAAGAACTGAGGAATCACATGGCAAATCTTTATCGCGTTTGTGAATAGCAGCAACAACAACCTGGCATATTCTCGCAAGAGGGCTTCCTCCAGGTTTCTGAAATCTATACATAGAGGAGCCAAAGATAAAAGTACCAAAACCTAAATACACAAATAGTGCAGAAATGGTAAAACCCCAGATCCAACCTTTGTGATCTTGCACCCACACAATAACAGTCCCCGAGATCAATGAGCCCGCATTGGCTACGAAATAGGTCCAATTGAAAAAAGAACTCTTTTTTGTTCTCTCATTTTCATCAGTGTCATCAAATTGATCAGCACCAAATGATGATATGCAGGGGCACTGTGCACCATACCCTAAAGCAACCATGTACAAACCGACAAAGAATATGATGTTCTGAGAAGAGACTGGATCTGTCCATATGATCCATGAGTGAGGACCAGTAGAGATTAATGGAACTGCTGCTGACAGAAGCAACATCATCAATCCCTAAATAAAAGGATAAAGGAAAAAAATGTGAACGACCATTTCTAGAAAAATGGTATAAAGGAAAATGTAAACGGTCATGTCTAGAAAAATGATATAAAGGAAAATGTAAACAATCATGTCTATAAAAGTTTGTCAAGTGTTGAATGCATCACTCCTCTTACATCTGAAGATTAACTGTATAAACTAGAGTTTAATACTGCCATTCGTCCATCTGAATTTCATACTATTGTTCACTGAGGATACAAATTTTTGCTCACTGAGTGGACGTAGGAATTGGGATCATCTCTTACAGTGTTTACTTCCAAAAAAAAAGGATTATAATCGTTATTTTAGATGATATACAAACGTGCATTAGTTCATACTGTCACTTACGATAATGAAGATCGTGCAGAAGATCAGAATTGTACAGTACTTCCCCAGATATGAATCAGCTAAGAAGGCTCCAACCAGAGGTGCAAGATAACTTGTTCCTGACCAAGTTGCAACATCTCTTGCAGCGGCCACGTTTGTTTCATGTAGAACTTTTGTGAGATAACTGACTAGGTTTTTTACAATTGAAGTAAAGGCCAGATAAGAGCAGAATGAAAAAACGATGGCTAATGAGGAACCCTTCCAGTTCCCTGTATGTTTCCTTAAAGCAGGATGCCCACGGATGCAAACAGATCCATCACCTGTATATTCAAGGGTCACTTGCGAGGAGTTCTCTTCATCCAGCAGAGGCTTGTCATGCTGGTATGAGGAGTCCATGGCTTTACTTTCTTACAAGTAAACCAGGTTAATGTCATTCTGAGACGAAGGAAGTACTCATCAGTTGCAACGGATTGAGATCTCACCCTACTCTCTTGATAAACGAAGAGTGATCATCTTGGTAGCCAATATGATGAAACACTCACACGGACTGAGAAGACAGAACCGAGAGAATGAAGCATGAACCGGCCGGATTGGCCGGACTCCGGCGAGCCCGACACTGAGCCCGCCACTCTCTGCTGCTCCGCGTGGGCCGTCCTCACTCTCCTCCAC

Explanation	CPC Score
noncoding (weak)	-0.997601

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0203500.2	3	7165010	T	C
Osa03LNT0203500.2	3	7164139	A	G
Osa03LNT0203500.2	3	7164715	T	A
Osa03LNT0203500.2	3	7164876	G	A
Osa03LNT0203500.2	3	7164891	T	A
Osa03LNT0203500.2	3	7165678	G	C
Osa03LNT0203500.2	3	7165870	T	C
Osa03LNT0203500.2	3	7166592	T	C
Osa03LNT0203500.2	3	7167370	C	T
Osa03LNT0203500.2	3	7167967	G	A
Osa03LNT0203500.2	3	7168778	T	C
Osa03LNT0203500.2	3	7166097	A	C
Osa03LNT0203500.2	3	7165011	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0203500.2	osa-miR5827	Translation	4.5	12.931	1	21
Osa03LNT0203500.2	osa-miR5079b	Translation	2.5	10.419	1	22
Osa03LNT0203500.2	osa-miR166i-3p	Translation	5.0	24.097	1	21
Osa03LNT0203500.2	osa-miR1428a-3p	Cleavage	5.0	24.159	1	21
Osa03LNT0203500.2	osa-miR1849	Translation	4.5	8.685	1	21
Osa03LNT0203500.2	osa-miR1850.2	Cleavage	4.5	21.463	1	21
Osa03LNT0203500.2	osa-miR2871a-3p	Cleavage	5.0	10.845	1	21
Osa03LNT0203500.2	osa-miR2871b	Cleavage	5.0	10.845	1	21
Osa03LNT0203500.2	osa-miR5079a	Translation	2.5	10.419	1	22
Osa03LNT0203500.2	osa-miR5150-5p	Translation	3.0	16.881	1	24
Osa03LNT0203500.2	osa-miR5339	Translation	5.0	14.7	1	21
Osa03LNT0203500.2	osa-miR5487	Translation	5.0	10.499	1	21
Osa03LNT0203500.2	osa-miR5506	Cleavage	4.0	11.01	1	21
Osa03LNT0203500.2	osa-miR2878-5p	Cleavage	5.0	14.59	1	24
Osa03LNT0203500.2	osa-miR812o-5p	Cleavage	5.0	11.741	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0203500.2	3	S34(t)	Physiological trait	Sterility	nan	nan
Osa03LNT0203500.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0203500.2	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0203500.2	3	Gy3a	Others	Others	RG266	C63
Osa03LNT0203500.2	3	qTAA3-1	Morphological trait	Shoot/Seedling	C316	C63
Osa03LNT0203500.2	3	Rhz2	Others	Others	OSR13	OSR16

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus