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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0203600.1

CTTTAATCTTTGAAAAGCAATTCCCTTGCATTTTCAACATTTTAGTCTCAACAATGTGTCAATGTCGGTCGTCGGGCATAGACGGGCTGCACAACCTTGTACAAACATGTGTAGCAGTACTTACAGTTACATGAGAATAGTGCTTACAACGGCAAAACTGGGACTCATGCTCTACGCATAAAGAATTCACAATAAACCTCAGATATTGAAATCTCTCTCGCCCTTCCCTTTCATTTCATCTGGTTTAAGCACGTGCATTAGAATAGTCAGAACAACCTTCATGATTTCTTCTTCATCATATGATGTCGTAAACGTAACCCAAGGAAGGATTGGGAACTCCCATCTCTGCTTAGGAACTGATATGGCATATGCAGTAACAAGAGCTGAAGCAGCAAGTTGACAGGGAGAGTTAAAAAGCCATGAACTATCTTCAGTCTCATAAAGAATATCCAAAATTTCCATGCAAACATCCATATTTAAAAGATCACCTATTTTGGATATTTCCCTGAATTGCACGAGAAGCTCCTCTAGGTATGTAAAAGCAATGTTCAAGGACCCAATGTTGTATTCCACTACCTCCATGAACACCAGTTCAGCATTGGCGAAATCGCGGCAAGTGAAATGCTGGTCGGCGATGATGCGATCACCAAGCGCCTTGAGGCTCTTCACCGACAGCGGCTTCAGCTCGTGAATCTTGCTGGCGATCCACACGGCAACGAGGGCGAAGAGCTCCAGGTTGCTGTCCCTCAGAGGCTCGAGCAGCCAGGAGGTCACAGCTCGGCCACCCCGTGCGCCACAGAACCCCATCTTCCTCCGGAGGGAGGGCAGTAGGCGGTCGGCGAAGAAGGAGAGCGCGGTGTACTTGACGACGGGACGGAGGTCGAGCCGCGTGGAGGCGTGGAGGAGGAACTCGATGAGGCGGCGGCGGCGGGAGGGGCCAGGCCACGCGCTTGCCGCCGCCTCCACCGCGCGGTCCTCGTCCATGGTGGTGCGCGCCGCGGTGCGGCAGCGAGGAGTTGGGAC

Coding Potentia
Explanation CPC Score
noncoding -1.00035
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0203600.1 3 7291297 C G
Osa03LNT0203600.1 3 7292270 G T
Osa03LNT0203600.1 3 7292623 G A
Osa03LNT0203600.1 3 7292916 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0203600.1 osa-miR2099-5p Cleavage 3.5 22.463 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0203600.1 3 S34(t) Physiological trait Sterility nan nan
Osa03LNT0203600.1 3 bph19(t) Resistance or Tolerance Insect resistance nan nan
Osa03LNT0203600.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0203600.1 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0203600.1 3 Gy3a Others Others RG266 C63
Osa03LNT0203600.1 3 qTAA3-1 Morphological trait Shoot/Seedling C316 C63
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus