>Osa01LNT0017700.1

ATAAAAGTTGCATGCGAAAGTCGATTCTTTTATATTAACTTTACTATTCGCGAACTACGGCAAACCCAATTTCGATTTAAACTGTTTTGCGGGTATAATATTTTGTTGTCATAAGTTTTTTTTTTTAATTTAATTTACCCGAGCATTATACCCATATATTAGATTAGAAATTTCTTCTCGCGAGCCAAATGTCGGACGGAATCCTAAAATTATCTTATAATATTACACGTTTTAATTTAGTTTATGACTAAACAATTAAATATAATGTACGTCTAAAATTCCTAGCGATTAAGTCCGAATTTCTACCGTGAATCGATTTCTTATAGAGATTATCCAAAAATGATCCATAATAGTCTATAACGATTCATCTATTTGATAATTATGTCTAAATTACTACGGCGAATTGATTTCCCATAGAAACTACCAAGAATAATCCATAATTAAATTTTGCAATTCTACGGCTATAATTAATCTATAATGAAATTCTAATTATTTTAAATTTTCTAAACTTACCCAAACTCCCTCTAATTTCCTATTTATTTCCTTTTCTTTTTCTCCCTTTCCTTTTTCTTTTCTTTTCTCTTTTCCCCTTTCTTTTTCTTTTTTTTTTCCTTTCTCTTTTTCTCTTTTTCCTTTCTTTCCTCCCTC

Explanation	CPC Score
noncoding (weak)	-0.922681

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0017700.1	osa-miR5817	Translation	4.0	8.53	1	24
Osa01LNT0017700.1	osa-miR2878-3p	Cleavage	4.5	12.733	1	24
Osa01LNT0017700.1	osa-miR2919	Cleavage	3.0	0.682	1	19
Osa01LNT0017700.1	osa-miR2919	Cleavage	3.0	0.004	1	19
Osa01LNT0017700.1	osa-miR2919	Cleavage	4.0	0.0	1	19
Osa01LNT0017700.1	osa-miR5499	Cleavage	4.5	11.234	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0017700.1	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904
Osa01LNT0017700.1	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0017700.1	1	nan	Morphological trait	Root	RM23	RM306
Osa01LNT0017700.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0017700.1	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0017700.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0017700.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	RM5

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus