>Osa03LNT0203700.2

CGCAGAAATGGTCATAGCACATAGCCCCATATCTCCATAAGATAATTGCCAAGGATAACTTAGAGCAGAGTGATCATCCAGTTGTGCTACAGAGCAGCTACAAAATTTAATATAGCATTCAGTCCTAAGAACTCGACAGCGAGGTCTCAGGCCATGGGCGACAGCCGCGACAGCAACACTGCTGTCGATGAAGCTCTCACTTGAGCGCAGCATACTCCTGGGATTTCTTTCTGTGCTTGCAACCACACGATCCAAAAAATTGAAGTTTCCTCATCTCTTCATGTCTTTTTGTTGTTGTCTATGTACTACAACCCTGCCTCTATTTTGCGGCATTCGGCTGGACCTTGTTGCTCCCAACCTTCTTCATCCCACCATTCTGCTGCTCCTTACTTACAGCAGACTTCTTATCCACCAAGCTACTGCCACCATTCGAGCTCCCATTGCACTCTGGTTTCTGCTCAACCGCGTCGGATTGTTTTGCTGGTGAGCTCTTTGGAGAAACGTCACCGTTGGCCATCTCCCCCATGGTGCTGGTGCTCTTGTTATGCACGTAAGCAGATGAATCTGTTGAAGAGATTGGCTCGGCAGGAGACTGAGAAGCTGTCATCATCTGATGAGGCAGTGCGTGACCCGATCCAGGAGGAAGGAAGACCCCCGTGCCAGGAACTGGGAGTCGTTGTGGAGCAGACCTTGGAGCAGCTTCTGCCATCCAAGCTGTTGTTGAGTTTGGCAAAGGAACAGGTGATGGGAAAGGCATGGCTGCAGCAGCAACTGGAGCAGGTGCTACAAAGAGTGGCTGCATTCCATCTGATGGAGGAATGTGATGCGCTCCAATGGCCGGCGCTGGAAGTACGCCACTGTTTGGGGCATATCCAAAGTGTTTAGGGCTTGAAGAATGACGCGCCATGTTAGCCGGCCTTGGAGGACCCCAGGGCATAGGAGGTGGTGTCAACGGGGTAGTAAACCGTGAAACACTTTCAGATGGTACTTGTTTTCTCGATAAAGACTTCCCGAAGCTTAGTAGGATCCGCTGCTTACATGCAGCAGGAATAGCTCGCTTAGCAACATCAGCACTCTTCCCATGCAACACCAGAAGAGACCCTGTCGAGAGAGAGAGCTTCAGAGGACCTCTATGATCACCTCGTTCTCCTGAAATAACTCGGCCGAACACCATATCACAATCTGTCAGGCAGAATGTACAAAAGGGTCTACCATACCAAGGAGGGGATTGGTGAGGGTGAGAATAATCCCCCTCATTGTAGTAATCAATAACACAATAATCTGGTTTTGTTGGTATAATTTCCTTCTGACACAAGCGGTCAAACAGATCATGCAGCAATCCAGGAACAGCCTCCACTTTTGTCTCTCTTGGATAGTCATCTTCAGGAGGGCCTTCAACGATAGGAATGCCCAGCTGAATAATTTCCCTCCCATGACCCTTCATTGGTCTTTTTCCAATTATTACAGTCTGCCCAGCTGTTTTACCAAAAAAAATCATAGTGAAGTGACAAGATCCCAAAATGTTACATGGTTAATATGACCCTTTTTCTCTAGTTTGTGCTCAGCATCTGTGTCAGTTTGTGTTCAGCGTCATAGTTGACATAGATGCTGAACACAAACTAGAGAAAAAGGGTCAAATTAACCATGTACTAACATAAGTGTCAGACACATATCCAAAAGGAGCCGCAAAAGTAACTGTCAATGATTTTCTAGTTGATCAACTAAGCATAAGAAAAGGCTGTTTCTCAGACAAATAATCTTTGATGGACTCATGGTACACTTTTTTATATACAGATATGGAAACAGATTTTGCAAAACTGGAATCTTAGTGCACAACCACGTGGTGCACAGTGAACACATTAGCACACAAATGAATAGCTGTTCATGGTTATTTCACCCAAAAAAAAGAAGGTAAGTCTACCTTCAAGCCCTCCTCGACGAAAAGAAGCTTTTGTTTCATTAAGTAAAGAGAGAATCTTGTTTTTCTCATTCTCATTTACCAACCCTTCATAAACCTTAAGCCCTTCAACAGCATTAACCTAAAGAAGCATAAAGCATATTTCATCAAATCTTCGAGATTCAAGAGAAGCTAGTTGAAAAGGAGATGCGAATACAGCACTAGAATTTCTGATCTAGGTAAAACAGACCGTCTTGCCATCAATAATGTCATTGACCGTATACTCCACAGGAGTTGGAACCACTTTACTGCTTCCTTCAGCAACAGCTTGCGGCCTAGGAGTTTTTTCACCTTCATGAGAAACAAGAGACTCCAACTGTGAGCTTTTAGCTTCAACCACATTCTCTGCTTCCTTCATTCCTTTCTCTTCCTTGTTATGAACTTCACGTCCATCTTTATCGGATCCAGCCGTCGCACCAGTGCCGCCGCCGCGCACCGAATCGGAGCGATGATGGTGACCACCGTGGCGATGGTGCGAGTGGGACGCCGAGAACGAGGGGCGGCCGCGCGGGGGAGGGGGCGGCGGGGACGGCGAGGCGCCGGGGCCCTGCTGCTGGTGGTGCGGCGGCGCGCGGCGGCGCCACCCGGCCTGCTGGAGCGCGTACGCGACGTCGCCGACGGGGAAGAACTGCTGCATGTGGATCACGGGCGCCCAGTGGTGGCGCCGCTGCTGCACCGCGGCGGCGACGTGCTCGAACTCCCCGGGCTCGCCGACGGAGCGGAGGTGGAGCAGCAGCAGGTCGATGATGGCGTTGGCCGCCGCGAACTCTCCGCGCAGCCATGAAATGAAGCCGTCCCGCTCGTCCACCACCCACCCAGCGCTCTCAACCGCGGCCGCACCTGCGGCGGCGGCGCCGGGCGCGGACGACGGGATGACGGCGGCGGAGGCCATCGCCTTTCCTCACTGAGAGTCTCCGGTCATAGAAAGGCGAACCCCAACCAGCAATGCGAGCGAAGGAGAACGAAACTAGCGAGAGATCTAGGGTTTTGCCGTGTTTTTTCTTCTTCTTCTTCTTCTTTTTCTTCTTTTTCCTTTTTCAAAAGGCAAGCTGTTTTGTCTCTGGTGGTGGGGCGTTGGAACGGAAGAGGAGAGCAGCAGCGCGAGATGTGAAGAGGAGGAGGGAAGAGGC

Explanation	CPC Score
noncoding (weak)	-0.364318

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0203700.2	3	7330319	A	G
Osa03LNT0203700.2	3	7330368	G	A
Osa03LNT0203700.2	3	7330860	A	G
Osa03LNT0203700.2	3	7331295	T	C
Osa03LNT0203700.2	3	7332504	A	G
Osa03LNT0203700.2	3	7332756	T	C
Osa03LNT0203700.2	3	7333410	A	C
Osa03LNT0203700.2	3	7334943	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0203700.2	osa-miR5836	Translation	4.5	18.112	1	21
Osa03LNT0203700.2	osa-miR6249a	Cleavage	5.0	23.141	1	21
Osa03LNT0203700.2	osa-miR6249b	Cleavage	5.0	23.141	1	21
Osa03LNT0203700.2	osa-miR166g-5p	Cleavage	4.5	13.766	1	21
Osa03LNT0203700.2	osa-miR396f-5p	Translation	5.0	17.981	1	22
Osa03LNT0203700.2	osa-miR5487	Translation	3.5	7.428	1	21
Osa03LNT0203700.2	osa-miR5492	Translation	3.0	15.778	1	21
Osa03LNT0203700.2	osa-miR5509	Cleavage	5.0	18.669	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0203700.2	3	qTAA3-1	Morphological trait	Shoot/Seedling	C316	C63
Osa03LNT0203700.2	3	S34(t)	Physiological trait	Sterility	nan	nan
Osa03LNT0203700.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0203700.2	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0203700.2	3	Gy3a	Others	Others	RG266	C63

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa03LNT0203700.2	osa-MIR2866	100.0	101	1	101	3.15e-48	187

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus