>Osa03LNT0204100.2

GGTGGTTTCAAACCTTCGACAGCAAAAACGAAGGCACGTCATTTTCTTGAGTGAAATCGTATATATACATCATATCCCATTACAAATACTACGAAGAGCATCATAAACACGCTCTGCTGTTTCTTCATCATCACAGTAAATAGTAGTCCTTTCAGATGTCACCTTCACCAGGGCTTCTCCTGGACTAGTGATCGAAATTACACGTTCACGATCTGAAGGTGCAGAGTAATCAGCGTCTGCAGAAAACGAGCATACAATTCCCTTTTCCTGCAAGGCTGACGGTATACAGCTCGCGTCCACAGTTCCCCAGTGTAGCAAGTGCCGCTCTGATCGATCTAATTCACTCTTTGCAGCAGCTAGCACATATTGTCCATTGCTTAGAAGGAGCTTTGCTTTCAACCTCGCAACAGCTGTGGTCTTGTCCAGCTGCCTAGGTTGCAACCCAAAGGCAACCTCAGTTGTCATGCGCACCTCGAATTCTTCCCGCATATTTGGGACCTCGATTGTTTTCCCCTTTGAGTAATACAGGAATGACCATGGTTGCTTATCTGTGGCTGGACACAACGACTTCTGACCTTCAGGAAACAGTATGAGCTTTGGTTTCAGCAATCCCAGTAATGGATCAATTTTCCCCACCTTTATTCCAGAAAGGAAAGAACACCCAAGGACCTGGATCGCCAGAGGCATGAAAGGTTTTAGAGTCAACTCAGCATCAACTCCTTGCTCCAAAACAAGAAGACATCGTTTGTCTGCACGCCATCGATGAAGCAAATGGACAGCTGGGCCATGCCTAAGACTCCAATGTGGACAAAATACAATGCAAGGTTCCTTCCAAGAGCAGGCCCTTTGAGTATAAATGAGAGAACAGTGATAGTTTGCCTTCCTTCAAAAGCTCTACATGGCCGAATAACGGCTCACAAGAGAAAAGCTTCTCTTGGCGTGACTTGCATAGCCATTCAGGCAAGGCATTGGTAAAAGTAATTATTTCTTCTGCTGTCTCAGAAATCATAAATATGGGAACCTGACTCTTCATGTTGGAAGAATGTAGTGTTTCTGACATATGTTCCAAAAGCAAAAGAATAATACCAATTCGTCCTATTGGTATTAATACAGAACCACCAGAATTTATTGCATCAATGATGCATGAGCATATGAAGCTGATTCTCTCTATCTCCTCTGCAATATCATCATTGCTGCACAGGAATTTGATGGTTTCATCTTCATCCATGCCATCATCCCTGAACACTGAATTACTAGCAAGGAGAATGTCAGTTTCATCCACTATATGCTCACCCATCTTCTTGTTATCATCATACATGCCATTTAAGGAAGAAAAATCCGAAAACAATATCACATCATTTCCCTTCAGAGAGCTATAATCAAAGTCTAATGCATGAGCTGACACAAATATGGAGCTCGGCAAGTAGGTCATACTTGCTCTTGGACCTTTTATTGTCCAAACACAATTGCCAAGTTCGAGACCAGAACTAGAGGCTTTCAGCATCAACATGCCATTGAAGCAAACCTCCTCTCCATATTTTACATACTGGGTTTTTTGCATGCATTCTTCTATATTATCCAGACTGTAAAGTGACACCAAAGCAGCTAAATTATTATTTTCCTCGTCTTCAGTCGTGATCTTCTGCAACACTGACATGAGTTTCTTGAGCTTCTCCCCTTCCATCCACACTGGTGACTGATCCCTATCTGGTCCATAACACCTTACAAACTCACGGTGCATCTCTACCAACTCTCTCATCATTAGACTTCCCATCCTAGCAGCTACCTCTGTCACATAGACCTTGGTGTTCGCAAATCCGGGGAATCGCGTGAGGAACGGGAGGCCAAGCAGCCCCGTAGCGGATGACACAAGCACGGCGTCTATGTGGCCTGCTTTGGCGGCCGCAACCGCGGTAGGCGACCGGTAGTAGGGCACACCGCGGATTAGGTCCTCCGCATCACCGGAGGAGGACGATGCGCCGAGGGGCACCGCGGAGAACGCCGTGAGAGCGGAGAGGTCGATGGGGCAGTCAAGGAGAATACGGAGCCCCTCCACCTCCAGGAGATGACTCGCCGGCGTGTAGTAGCCTCCATCGACTCCGGTGTCCAGGCAGGTCAGTTTCATCGAGAACTCGAGGAGACACGGGGGATGAGGTTGGGAGGTGGGGAGGGGGTGGCGGCGGCTCGGAGAGAGTGGCGGCGCCGCCCTGGGAGCGAGAGTGCGAGAGGGGAGGACACAGCGGTTCGTGGGT

Explanation	CPC Score
noncoding (weak)	-0.763947

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0204100.2	3	7574287	T	C
Osa03LNT0204100.2	3	7574427	C	A
Osa03LNT0204100.2	3	7575051	G	T
Osa03LNT0204100.2	3	7576372	T	G
Osa03LNT0204100.2	3	7576744	T	A
Osa03LNT0204100.2	3	7573366	A	G
Osa03LNT0204100.2	3	7574285	A	C
Osa03LNT0204100.2	3	7574185	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0204100.2	osa-miR160a-3p	Cleavage	4.0	10.49	1	21
Osa03LNT0204100.2	osa-miR160b-3p	Cleavage	4.0	10.49	1	21
Osa03LNT0204100.2	osa-miR160c-3p	Cleavage	5.0	10.49	1	21
Osa03LNT0204100.2	osa-miR160d-3p	Cleavage	4.5	10.49	1	21
Osa03LNT0204100.2	osa-miR418	Cleavage	4.0	13.336	1	21
Osa03LNT0204100.2	osa-miR528-5p	Cleavage	5.0	12.986	1	21
Osa03LNT0204100.2	osa-miR1874-3p	Cleavage	2.5	19.26	1	24
Osa03LNT0204100.2	osa-miR5144-5p	Translation	4.5	13.045	1	21
Osa03LNT0204100.2	osa-miR5144-5p	Translation	5.0	17.97	1	21
Osa03LNT0204100.2	osa-miR5340	Cleavage	4.0	15.86	1	23

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0204100.2	3	S34(t)	Physiological trait	Sterility	nan	nan
Osa03LNT0204100.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0204100.2	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0204100.2	3	qTAA3-1	Morphological trait	Shoot/Seedling	C316	C63
Osa03LNT0204100.2	3	Gy3a	Others	Others	RG266	C63

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus