>Osa03LNT0205000.2

CACATGGCTAAATCATATCAATCTGTCACAACATGATATCTTGCTCCGTGCACAGCACTTATTTAACCATGTCCGCGTGTAGCCTCTTCAACATATCATGTTTGGCTAGTGCTACATGAAAGAGACACCAAACGTACACATCATGAATAAATCTAACGGAATTCAAACAACATTATCAGTTTATTTGTATCGATGATACAGCGGTTGACACCTCCCTTGTTCTTGGGTCACCAGCTTCCAATGAAACACCTCGGGGATCTTCTCGAACAAGAAGAGGGAGAACACCAGCTGAGCTCCAAGCTTTGGCTACAGCATCACTTGCTTCACCCAAAATCACTGAGAAAACTGCATCAAAGCCACCGGCCCCAGGAACTCCAGCTAGTAGAACACCCTCCATATTCATAGTGGCATCCAGAAGTTGAGTTTGTGATTCTGGCTCAATTGGAACACCAGCTGCTATGCCCATCTCTCGCATATGAAGCCTTATTTCAAGGAAAGCATCTCTTGCGGCCAGTAATGATCTAACAATTAGTTCTTGATGTTGATTGGTAGCCACCTCTGTCCACTTACTGCACGTGAGACGACTACAGGATCGTAAAACAGATTCATAGGCTTCCCAGTGATCTTCAGCAAGTTTGTTTAGGTTCCTCAGTTGGTTCTCAAGCACTGAATTAGCAATCCCCAATTTACTCCATGTCTCCTTGGATTTCTGAGGGTCTGACTTCTGCCACTGTTTCACAGATCCAACCATTGATGGAGTGGATGATCCTCCAGTTCCAGGTTCCCCTAGAAGCTAACAAAAAATTCCCTATAGTCAGAAGTAGTACTTATCCTTACAATCAACGAACAGAACACAATCTCCCTAATCAATAAGGCAACAAGCAATCAAATAACACTGCAAAGAATATTGGATAGATTGTTCATATTGCGTTCTCACAAAAAATGTCTGATCTCTGCTGTGCCTTGTAAACAGAAAGGCGTTTCTGGGTAGTGCCCTTAAAGCTTCATCTAAAAGTTCTGCATTTCAAGTCACCTAAATCAAAAGGATAGATATTTTTAAGAGAATGCAAACCTACAAACTACGTTCTGGTTGAGGAATGCATAGTGATCACAAAAACTAGCATGTTCATTTCTTACTGAGAAAAAAACAAGCATGATTTGTAGCATTCGTGCTTATAACAGTATTTTCTCACAAACTGTGATAATAAAAAACAGCCATGAACTGATGGTTAAAAAGGCACAATAGAAGTGCAACTAACCTCTAATCAAGCTGTAAATCTTATAAGGCAATCATCATACCCATAATTTTTCTAATGACTGGTGACAGCCCGTTAAATAGTTTATTGACCATTTAGGAAACCTAGTCATCAATCATAAGTTCTTTTTAACTTACAAGGGACATTAGAGGAGGCAAGGAAAACTTAACCTTCTCATGATCCCAACTCTGTGTAACAATATCTGCCACCACATCTGCCATGCAGTGCCCACCTGTAACCTGAGCCGAGGATAATATTTCTGGAGAAAACCTTGTGTAACGTTGACTCCCATAGACAGCAGCACTAACATCAAACCCACTGCCAATTTTTCCTTGTGCTATACAATGTGCACTTTGAGCAATAGCATGCAGCAAGTCAAGATCTCGTCCAGCTGCGTTGCCACCGGAAGATTGGCCCAAACATGAAAGGTTAACAGTTCCAAGATAGTGAAGAAGAGCTGCAACTACTGATGTGGTCATGGCAGCTGATGACCCAAGTCCAGTTTTGGCAACTCTGGAGTTAGAGGAAGGCCACGTGCTTCAATCTGTTTTCTATAAGAATAGAAATCATTGCAGCCCAAAATTGTAATGTGCAAACCTTGCAAAAGCAACTTGTCCAGTGCCTCCTTCCCCTCTTTGTCAGTGACAGTCACTTTAGCAGCTGCTACCGAGAATTGCACTGCCTGCTCCACAAAAGGGTTTGCAGATTCCCTTGAAGACGTCAACTGGAGCGTTGATTTCTTCAGGGAGAGCTTGTAGGTGGCCTCCCGGGAGAGCTGAGGAGAGGTCACTTTCACATCCGTCCACGCCCATGCCCAGGAGTCGTGGCTGAGCTCGTCGCGGAGCGGGCGGACGATGGCGTAGAAGCGCGCGCTGGTGCTGAGGACGAGGCCGGCGTTGGGCCGCTCCAGCACGAGGTAGCCTCCCGCGACGAGCACCTTCCCCGGCGCCGACGCCACCACTTCCATGCTCAGCTGGGGGGACGCGATCCGGAGCTGCGGGAAGGCCGGGTGGCGCGCGGCGGAGAGCAGCACGACGACGCGCGCCGCCGCCTTCCGAGGTCGCTGACGGAGGCGGAGGAACCGAGGAGGATCGCGAGC

Explanation	CPC Score
noncoding	-1.20504

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0205000.2	3	8068539	G	A
Osa03LNT0205000.2	3	8068666	C	T
Osa03LNT0205000.2	3	8069083	A	G
Osa03LNT0205000.2	3	8069746	G	A
Osa03LNT0205000.2	3	8070229	G	A
Osa03LNT0205000.2	3	8071076	G	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0205000.2	osa-miR812r	Translation	4.5	16.652	1	24
Osa03LNT0205000.2	osa-miR6255	Translation	3.5	14.205	1	22
Osa03LNT0205000.2	osa-miR6256	Cleavage	5.0	18.021	1	22
Osa03LNT0205000.2	osa-miR319a-5p	Translation	5.0	17.256	1	21
Osa03LNT0205000.2	osa-miR444a-5p	Cleavage	5.0	12.349	1	21
Osa03LNT0205000.2	osa-miR169r-5p	Translation	4.5	17.904	1	21
Osa03LNT0205000.2	osa-miR1855	Cleavage	4.5	21.242	1	21
Osa03LNT0205000.2	osa-miR2871a-3p	Cleavage	5.0	16.644	1	21
Osa03LNT0205000.2	osa-miR2871b	Cleavage	5.0	16.644	1	21
Osa03LNT0205000.2	osa-miR5151	Cleavage	5.0	15.3	1	22
Osa03LNT0205000.2	osa-miR5152-5p	Cleavage	5.0	6.625	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0205000.2	3	S34(t)	Physiological trait	Sterility	nan	nan
Osa03LNT0205000.2	3	qGW3	Morphological trait	Seed	C706	C12534S
Osa03LNT0205000.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0205000.2	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0205000.2	3	Gy3a	Others	Others	RG266	C63
Osa03LNT0205000.2	3	qTAA3-1	Morphological trait	Shoot/Seedling	C316	C63

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus