>Osa03LNT0205600.1

CAAATCCTACTGATCTAGAATTGAATATACCACCAACAGTTCTCATGCATCCACATTCCACTAGTACTGAATATACCAATTCCATTTAATTACAAATGCCATGTACATAGGTTAGTTGTACAAAAAGAGAAATTCTCCTATACAATCTACAAAATGAGACAAAACGATGGCAAATCTACAACAGGCAAGGCATTTCCCTTGAAGAGAAATGCCACTCCAAAATATCTTGTGACCGCCATGATAAGTTGAGCATCTAAAAACTTGAATCAGATTATCAGAAAGACAAAAGTATTAAGGGTCAGATATATAGATTATAATAATACTCCATTCAATGATAAGTAATCTATGCAACACCTACTATTTCAATACAGAATTGAAGATCAGTGTCAAATGTGCAGGATAAGTGTCAATAACATAACTGATGTAGTTCCATTTAATTCAATCTGTAGCATAGCTTCGATATTCTCACAATCCACCAATATTAAATTACCAGTTCCATTTTATGAGAAATTTATGTTGAAGCAGTATAATTGCAATCGTAACAGATTCAATTACAATTTACAAGCAGCAAGGATTGCAATTTATCTCACAAACTATGGGAACAAACTGATTTTAGCTTACATGATGTATGAGCCTTTAAGTTAGTGTTGATCTTCTGTTCCTTCAGGTACCCTTCTCTGACACTTCAGCAAGAAGTTGATTGCTCACCCACAGGTCGCAAATCATAGCTAGTAAATAAATAAAAAGAAGATAAGTGCTGAAGTACAGTTTAATTGGCTCCCACTTGCAAATGTTAACTTATATTAGAATTGAGATGTATGTAGGTGACATTTTCATAATTAATGTAGATGGAAAATCTGAAGCCCGAAGACTGTTTCAAATTTGTACTACGACAACTCACTGCAAGGACAGCTAGCCACCTAATTTGCAGAGATCAACTAAGGGAGTTTTATTTAAAATAATTATACTAGGATGGTACATTCTACAAGTAAAAACTCAGTAAACACACAATGTACATGCATATTTCTAATAAATGGATTGATATAAGTTGGAAATGGCTTCACTAGTAAATAGAACTTGGCTTGAGTAGTTGCTGTACTATGTGGTGCATGCAAAGTTCTCAATTAGCATTTCAATTATTCCAACTGGTCCTGATAGCTGATGCATGTCTGTGTGAAATCAATAATAGATCAAATCTTAAAAAAAATGTTCACCACTCTTTCTAGTACATATATAATAATGTCTGCCATGAAATGAAAAGGAAATGGAGCAAACATAATCTCCAATTTATTGAATAGTGCATCATATAGAAGATTAGCACTTAATTGTTAATACCATTGAAGTTCTTGTAATGGAAAAGTAAGCGGAAATCTAAAAATATGAACAATTATCCGTTTTTCAATTTGATACATTAGATCAGACAGAAAATGTCCATAATGTGGTACACTACATGAGAAATAGTGCATTTTCTTAGTACTACCACATTTCTGTAAACATTACAGCTAACTTCATGAGAAATATAAAGCAGAACTGGAGCATTAGCTAAGATTCATGGGGAAAAGAGACAAGTAGGTTCACCCTAAACTCTTTTGCACCAGTATTAAGCATGGTTGCAATGCAAGTTTCCATCCCATGGCTATGAATGACAGCCCCAGCTCTCATCAAATAAGCCTTGGGTGCCCAGAGGCGGTCGTCGGCGGCGACCCAGCGCCAGGTGCTGCGTGCGTCCAGGAGCTCCATCACCCGCCCCATCACCTCCTCCCCGAGCACATCCACGGGGTCCTCTCGTCTCTGCCGCCTCCTCCTCCTCCTCCCCCTCTTCCGCCTCTCCCACTCCTCCGCCTCCCGCTTCCGCCGCCGCCGCCGCCCGCGCCTTGGTTGCCGATGACGTCGCCTGCACCTTGCTCGCCGCCGCCGCCGTCGCCCGCACCTTGCTCGCCGCCGCCGCCCGCGCCTTGGCCGCCGATGCCGTCGCCTTGCCGCCGCCGGAGGAAGCGTGAGTGCGTGACGGCTGGG

Explanation	CPC Score
noncoding (weak)	-0.573933

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0205600.1	osa-miR5829	Cleavage	3.5	14.183	1	24
Osa03LNT0205600.1	osa-miR397a	Translation	4.5	10.37	1	21
Osa03LNT0205600.1	osa-miR159a.1	Cleavage	4.5	16.691	1	21
Osa03LNT0205600.1	osa-miR159b	Cleavage	4.5	16.691	1	21
Osa03LNT0205600.1	osa-miR159c	Cleavage	3.5	16.691	1	21
Osa03LNT0205600.1	osa-miR159d	Cleavage	3.5	16.691	1	21
Osa03LNT0205600.1	osa-miR159e	Cleavage	3.5	16.691	1	21
Osa03LNT0205600.1	osa-miR159f	Cleavage	4.5	16.691	1	21
Osa03LNT0205600.1	osa-miR814a	Cleavage	4.5	20.975	1	22
Osa03LNT0205600.1	osa-miR814b	Cleavage	4.5	20.975	1	22
Osa03LNT0205600.1	osa-miR814c	Cleavage	4.5	20.975	1	22
Osa03LNT0205600.1	osa-miR1425-5p	Cleavage	4.0	12.21	1	21
Osa03LNT0205600.1	osa-miR1871	Translation	5.0	14.706	1	24
Osa03LNT0205600.1	osa-miR2095-3p	Cleavage	5.0	13.339	1	20
Osa03LNT0205600.1	osa-miR2095-3p	Cleavage	4.5	17.57	1	20
Osa03LNT0205600.1	osa-miR2863a	Cleavage	4.5	11.427	1	21
Osa03LNT0205600.1	osa-miR2931	Cleavage	4.0	12.406	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0205600.1	3	S34(t)	Physiological trait	Sterility	nan	nan
Osa03LNT0205600.1	3	qGW3	Morphological trait	Seed	C706	C12534S
Osa03LNT0205600.1	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0205600.1	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0205600.1	3	Gy3a	Others	Others	RG266	C63
Osa03LNT0205600.1	3	qTAA3-1	Morphological trait	Shoot/Seedling	C316	C63

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus