>Osa01LNT0000800.1

AGCCAATCAATTTATATTTTTGCAATTTTTTATTAAACCACCGGGCAGCGGCACAGTTCGATTGAATCTTCATTGATTTCAATTGAATCTTCAGTTACAACATTAAGCTATTCCAGTGAGTATGGGCGCTCTGGATCCTTTATATCTCTAATATGATGTAAGAAGGTTAAGGAGTGCAAACAAAAGAAAAATTTTGAGGGCAGCAGAACTCCAGATAGAGGTAAGTATAACAGGAAAGAAAAGGTACACAGCATGTAGATAAGTTAACGAAGAAAGCACATCAAATATTTCTAGCTGGTCAATAGCCTCTGCCGCATTTTCATCTGTGGTTTCTGGTGCCTGCCGAGCACGCCTCTCTTTTTTCTCATAAACTACAGGATTAGCATTTATTAATCCCACAACCATTTTTCTGATGCAATGCACTAATTTATATCAGAATGGCGAAATTCCGGCGGCGGGCGGCGGGCGGCGTAGGCGGCCGTACACCACCGCGGGGGCGTTTGAGCCCATCTAGTGGTGCTGGTGGTGTTCCATTCTGACTTCGCTTGTAACATCTGGGCCGGGCTGTG

Explanation	CPC Score
noncoding	-1.24106

Transcript ID	Chromosome	Locus	Ref	Alt
Osa01LNT0000800.1	1	928012	T	C
Osa01LNT0000800.1	1	928090	C	T
Osa01LNT0000800.1	1	928346	A	G
Osa01LNT0000800.1	1	928409	A	G
Osa01LNT0000800.1	1	928766	A	G
Osa01LNT0000800.1	1	928880	A	G
Osa01LNT0000800.1	1	928938	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0000800.1	osa-miR5539a	Cleavage	5.0	17.816	1	22
Osa01LNT0000800.1	osa-miR5539b	Cleavage	5.0	17.816	1	22
Osa01LNT0000800.1	osa-miR5495	Cleavage	5.0	18.32	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0000800.1	1	yd1a	Morphological trait	Seed	R753	C161
Osa01LNT0000800.1	1	nan	Physiological trait	Eating quality	C161	R753
Osa01LNT0000800.1	1	nan	Physiological trait	Eating quality	C161	R753
Osa01LNT0000800.1	1	n+p1a	Resistance or Tolerance	Other soil stress tolerance	C161	R753
Osa01LNT0000800.1	1	n+s1a	Resistance or Tolerance	Other soil stress tolerance	C161	R753
Osa01LNT0000800.1	1	Gc	Others	Others	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus