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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0206900.1

CAAACGCACAAGAAATATATATTCATGGTGATGTCAGTTTACACAATATTCGCTCTGCTTGCAAAGCCCAAGAACAACATATATGGCCGTTTCTGGACAGCAGGAACATACCGTCTTCTTGATAGTCCATTAATCTTAACTTGGATAGAGTCCATTAATGGTCATACCTCCATCAACCGAGATCGTCTGGCCAGTAATGTAACTGGAACCAGGCATGCAAAGAAAAGCAACCAGCGATGATACTTCTTCAGGTTCTCCAACACGCCTAAGTGGAGTTCGGCTCACCACAGCACCTTCAAAGTCCTTATTTGCCAAAAGCTGCATAAAACAATAAGAGGGCAAGAGTTCAGGGACCAGACATTCCATTTTCTAGCACCCCGCAAACAAAGGATAAATAGATAAGCTGGAGTAAAAGAAGAGTTCAGCGTGCAGTACTCAGGACACTTACACCTGTAGCTGTGCTACAACCTTTTTATATCGTGGAATATATTAACAGTATAAGAGGCAAATTTGGGACTAAGGAATAAGAGAAGTAGGGTGTGCGCTGTCACATTTTGAGGTAATCATGGGCATAGAGTAAAAAATGCACAATCATATTTATGATGTGCTTCTATGCTATCCAATTACAAATGAACATGAATGAAAAAAACTTGATCAGCAGGTTAAGAAGGCTATAATTAATTTTAAATCAGCCTCAAGATGAAACTGAAGTCAAACAGAAAAGAAAGGTGGAAAAAAAAACAAGTGAGGCTGAGCTAGTTTCGGTTGGACATTTTTCCAACCCAAAGCTTGTGAAATCTGGTGACACTTTGTATAGACAAATTGGTAAAATAAATATAGCTTAGTCAGGTTCAGAAACAAGAAGATGGCAACCTTGATGCAAGTACAGTTGTATGTAGCCTGAATACCGTATCCTGACAATTAGTTGAATACTTGACTACATGTTCTGACTTAAAATGACAAGTATCCAAACATGATAAATCAGGATGGTTGATAAGCAAAAGCTTTACTCCTTCGGTAAGTGAAGTCCTGATATACCACGGGGCAATAGAGTTGGATCGTATGTTGTCTCTCGCCCATTCGCATGCTAGGTTCTTGGTTAATTGGTTGATTGCACCTTTTGTCATAGCATAGAGAGAACCACTAAATACAGCTACCAATCCACAGACTGATGATATGAAAACAATGCTCCCTGACCCAGATGCTTTCAGAAGAGGATGCGAAAGTTGGCACAGATGATACGCAGATTCAAGATTAGTCGCCATCATAAAAGAGTATTCCTCGGCAGAAAATTCAGTGGTTGGCTTCCTTATGTTTGTCCCCACATTGTTTACGAGGATATCGAGCTTGCCGCCGAAGAGGTCAGCGACTTGGCGGAGGAGGCGCTCACGCTGGTCCCGAACCGAGAGATCGCAGACGGAGGTGGTGACGCGGAATCCCCGGGCCTCCCACTCCTTGAGGCGCTCGCTCAGCTCCTCCTCCTTCCGGGAGCATGTGTGCACGGTGGCCCCCAGCGCCGCCAGCTCCTCCACCACCGCACGCCCGATTCCGCGGGTGCCGCCGGTGACGAGCGCCGTCTTCCCTTGAAGAGACCATCTTCTCGGCGCCCCCACCTTCGCCGAGGTCTCCGCAGCCGCGGCCATCTCCGAACCTCCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.937757
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0206900.1 3 8946610 G C
Osa03LNT0206900.1 3 8947007 T C
Osa03LNT0206900.1 3 8947823 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0206900.1 osa-miR2098-3p Cleavage 5.0 10.705 1 20
Osa03LNT0206900.1 osa-miR5151 Cleavage 4.0 16.253 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0206900.1 3 S34(t) Physiological trait Sterility nan nan
Osa03LNT0206900.1 3 qGW3 Morphological trait Seed C706 C12534S
Osa03LNT0206900.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0206900.1 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0206900.1 3 gl3a Morphological trait Panicle/flower C63 RM232
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus