>Osa03LNT0206900.2

CAAACGCACAAGAAATATATATTCATGGTGATGTCAGTTTACACAATATTCGCTCTGCTTGCAAAGCCCAAGAACAACATATATGGCCGTTTCTGGACAGCAGGAACATACCGTCTTCTTGATAGTCCATTAATCTTAACTTGGATAGAGTCCATTAATGGTCATACCTCCATCAACCGAGATCGTCTGGCCAGTAATGTAACTGGAACCAGGCATGCAAAGAAAAGCAACCAGCGATGATACTTCTTCAGGTTCTCCAACACGCCTAAGTGGAGTTCGGCTCACCACAGCACCTTCAAAGTCCTTATTTGCCAAAAGCTTGATGCAAGTACAGTTGTATGTAGCCTGAATACCGTATCCTGACAATTAGTTGAATACTTGACTACATGTTCTGACTTAAAATGACAAGTATCCAAACATGATAAATCAGGATGGTTGATAAGCAAAAGCTTTACTCCTTCGGTAAGTGAAGTCCTGATATACCACGGGGCAATAGAGTTGGATCGTATGTTGTCTCTCGCCCATTCGCATGCTAGGTTCTTGGTTAATTGGTTGATTGCACCTTTTGTCATAGCATAGAGAGAACCACTAAATACAGCTACCAATCCACAGACTGATGATATGAAAACAATGCTCCCTGACCCAGATGCTTTCAGAAGAGGATGCGAAAGTTGGCACAGATGATACGCAGATTCAAGATTAGTCGCCATCATAAAAGAGTATTCCTCGGCAGAAAATTCAGTGGTTGGCTTCCTTATGTTTGTCCCCACATTGTTTACCTAGACGACCAAATGAATTCAGGATAAATCAAAAGGAACGTTCAGATATTGAATGATCAGATAGCGTAATCAAATCAAAATTATAAAAAGGAAAGGCACAATAAAACACATCTATGAGAAGATGTACATGGCATGCAAATCAAGCAAACAAAACCTGCACGATCAGTCTGTAAAATCCCATACCAATCAAAGATGTTAATTCAACTATGTGGAGCGTTAGTACCATATAAAACTGAAAATTTGCATTTCTACTCGGTAACCCTTGTTGCTGACATTGCATTTTAGAAGCGTAATAACACAATTTTTCGGCCATTCGAACATGTGTTCTATCTCCAACAGGCCAGTTTGTTGGGCTCTAAATACAACCAAGTTACAACCATCATATATTGTGTGTGCACATTTGAGATCGGATTGCGAGAAAACAGCTCTTATGAAGATCACATTGCGCAACCAAGCAGGTCAAAATCTTTCTATACTTCCCCGCAAAAAAAAAAAAATCTTTCTAAACTTCTGAAGGGCTCTTTTATCTTCAGCTCTATTTGCCCTTTGAGTTATCTATACCAGCATTCTTTGTTTGGATGGGGAATAGTACGAGGGGTTTTAGGGACGAACTTTGAGGCGAACATGCAACTCAATTGCAATATAGAAACGATAAAAGGGGTAATAAAGGAGAGACGAGAGAAGGGGAGTGACTTAGTCGTCTCACGAGGATATCGAGCTTGCCGCCGAAGAGGTCAGCGACTTGGCGGAGGAGGCGCTCACGCTGGTCCCGAACCGAGAGATCGCAGACGGAGGTGGTGACGCGGAATCCCCGGGCCTCCCACTCCTTGAGGCGCTCGCTCAGCTCCTCCTCCTTCCGGGAGCATGTGTGCACGGTGGCCCCCAGCGCCGCCAGCTCCTCCACCACCGCACGCCCGATTCCGCGGGTGCCGCCGGTGACGAGCGCCGTCTTCCCTTGAAGAGACCATCTTCTCGGCGCCCCCACCTTCGCCGAGGTCTCCGCAGCCGCGGCCATCTCCGAACCTCCC

Explanation	CPC Score
noncoding	-1.01334

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0206900.2	3	8946610	G	C
Osa03LNT0206900.2	3	8947007	T	C
Osa03LNT0206900.2	3	8947823	G	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0206900.2	osa-miR426	Cleavage	5.0	16.663	1	21
Osa03LNT0206900.2	osa-miR426	Cleavage	5.0	18.862	1	21
Osa03LNT0206900.2	osa-miR2098-3p	Cleavage	5.0	10.705	1	20
Osa03LNT0206900.2	osa-miR2872	Cleavage	4.5	9.132	1	21
Osa03LNT0206900.2	osa-miR5151	Cleavage	4.0	18.215	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0206900.2	3	gl3a	Morphological trait	Panicle/flower	C63	RM232
Osa03LNT0206900.2	3	S34(t)	Physiological trait	Sterility	nan	nan
Osa03LNT0206900.2	3	qGW3	Morphological trait	Seed	C706	C12534S
Osa03LNT0206900.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0206900.2	3	qTA3	Physiological trait	Eating quality	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus