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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0207400.1

TGCCTCTGAACACTATCAAAATTCTACAACTGGCTACAAGGCTACATGTAACAAGAATGTGTTATATACACTGTTTAGACCTGAAATTATCAGGTTCCAAAAGTTTCAACAGCAATTTCTCTAACTTTGCCGAACTTTTCGTCGGCCTCAGAACAAAAGACCTTCCGAAGAAGGAACATGGATCTTTGTCATTTACCGAGCTACCTAAGCACCATCCACCAGGTGTGAATCGTTCAGGTGCTCTCCTCAACAGCTTGGTGTCGATCATATCCAGGACTGGATTGTCATTGGCAAAGGAGTGTGCAAATGGTGCACCGCTGCTTGCGATTGCGTCAAAATGCTCGGTTGTCAGGTTAACAGGTAATGTTCGTGGAGGGTTGTCCCATGCCATGAATCGGAGATCATTATTAACGGTAGTGTTCTGATAGTACTTTGAGTTGCAGATCACCGTGTGGAAGTAGCCCTCCGAGGATGCCAAGAAGTTGGCAAAATACATGAGTAGAGTGCGAGGAAGGTTGTCCCATCCCAATAAGCAAAATTCCAGGAATGATCGGCTAAGTATTACCCATGAAGAGCCTACAAATATTTTGAAAGCTGAAGGCAAGCTCCTTTTCTCCTTTGTTGTCACAACCTCAGTTTTATTTGAGATCTGCAATGCTGGATCTACAATAATTGGTCTCGCCCTTTGGTACCTGCACATGCAACCAGAAACAATCATAATGAAGAAAATATCAGAAAGGTTCAGAAACACATGGCAGAAAAGTGTTCTTACTCCCTCCAACCAATATTGCTTGTGTGCTCAATAAAATTCAGATCTCTTGGGAGATATGAGAAGATGTGAAGGATGTCATCCTGAGGCATGAGCGGGTAATCGGAGGCGCTGAGATTGATGAACCAGCTCCACCCATCGAACTCCCGGAGCATCACGGCGGCGGCGTGGAGCGTCGCGGCGAGCTCGGTGGGCCCGCGCCGCGAGACCGGTCCCCACTCCCCCGCCGCGGCGACCCGCACGTTGCCGTACCGCCGGGGCGCCTCCTCGCCGCGCACGAACGCCTCGAGATCCGCGCGCTCCTCCTCCCCGGCGACCCCGACGAGGTAGAAGTTCCAGGGGTGGTACAGCGCCCGCAGCATCCGCCGGATCCGCGGGCCGTCCCCGGCGCCGCCGGATACGAGGTACGCCAGCCTCGGCGGCAGCTGGTGCGGCGCCGCCCCGCGCCGCGGCGGCGCCGCGGGGCGCGCCGCCCCGAGCGCGGCGTAGAGGACGGGCACCGATAGGAGCGGGAGCGCCAGCAGCAGCGCCCGGAGCCACCTCAGCCGGCGGTTCCCCTGCGGCTGCGGCTGCTTCCTCATGTCCGTCCTGCTTCCGCCGCCCCGCGCGCGTCGGCGAGGGAGCCGCTAGAGCATCACCGGCATTCGTTCGCGGCGGCTCGCCGGAGCCGTACGAGCTACTAGTAGTAACGCCTAGAATACGAATTTAATC

Coding Potentia
Explanation CPC Score
noncoding -1.01172
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0207400.1 3 9384873 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0207400.1 osa-miR5788 Cleavage 5.0 20.703 1 21
Osa03LNT0207400.1 osa-miR5833 Cleavage 5.0 20.269 1 21
Osa03LNT0207400.1 osa-miR2873c Cleavage 4.5 14.253 1 21
Osa03LNT0207400.1 osa-miR437 Cleavage 4.5 15.172 1 21
Osa03LNT0207400.1 osa-miR535-5p Translation 4.5 11.958 1 21
Osa03LNT0207400.1 osa-miR1423-3p Cleavage 5.0 19.998 1 21
Osa03LNT0207400.1 osa-miR444d.3 Translation 5.0 13.916 1 21
Osa03LNT0207400.1 osa-miR2095-5p Cleavage 5.0 16.522 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0207400.1 3 gl3a Morphological trait Panicle/flower C63 RM232
Osa03LNT0207400.1 3 qBM-3 Physiological trait Source activity RG369 RG745
Osa03LNT0207400.1 3 qGY-3 Morphological trait Seed RG369 RG745
Osa03LNT0207400.1 3 S34(t) Physiological trait Sterility nan nan
Osa03LNT0207400.1 3 qGW3 Morphological trait Seed C706 C12534S
Osa03LNT0207400.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0207400.1 3 qTA3 Physiological trait Eating quality nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus