\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0018700.1

CCGGACGAATCACCCCCTTTACTTAATCCGGAACGGTTTTCAGCCAATATGACAGCAGGTTCTCAAACAGCAGCATATCCATGGATTATGGATAGATTGTGGTTCTTGTTAAAAAAACAAAAAGCTCTTCAAATGTTCAGTTACGCTCATTGAGCTGACTGAACCACCATGCAGTTGTATGAAGGTGTAGATTGGCAGATCAGGACTTCAGGATGAACAAGTATCTTCCTAGTAGTTCTTAAAACAGTTCAGCAGGGGACAGTTGCTTTGCCATTTAGAGCACCCATCTGAAAACAGAACGGTGTTCCCACAGCACCACTGCACCAGCTCGTCCAATGATCCAGTCCATGTAGCAACAGAAAAATTGTTACAACTTCTAAGTATCCATGATAGGCATAAAACCTTAAAGCTTCAGCTTCCCTTTATGCCGCCTGTGAAGCTTCTGCTTCTTCTAGGCGCAGCTTCTGGTAATCGTTAGCATGCATTATGTCCTCATGATTGATTGCACTATGAATGCCCTGAGCACAAAAAAGACTCTTCAAAATGTTGGATACTTCATCCATGCCTAGAAGAGCTCAGCTCAGTCTCAGAGGTTGTCGGCGCAGCCAAAGCTGCACATGGCTGATCTTATTGCTTCATTTGGAATCCCGATATTGACATCTTCAGACAATTGGCTGGTCTCCACGGAAGCCGGCGGCGAAGGGCGCCGTCGATCTAAGCCGGTGCTGAATCTTCGCGCCGCCGATGCCGGCATGCCGCGGAGAGTACATCGGAGATCCAGATCCTCCTGGAGTTTTGACGGCGCGTCCGCAGCCAGCTGCTCGCTGCCGGAGCCAGAATTGGGGAATCGGCGGCGTCGGGGGAGGAGAGGAAGCAACAAGGTGAGGGGGGAGATCGAGGGTTCCCATCGACTCAAGTGTCGATGCAAGCCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.521067
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0018700.1 1 14775870 T C
Osa01LNT0018700.1 1 14777798 T C
Osa01LNT0018700.1 1 14777896 T C
Osa01LNT0018700.1 1 14777913 T C
Osa01LNT0018700.1 1 14776597 T A
Osa01LNT0018700.1 1 14777610 T C
Osa01LNT0018700.1 1 14776204 C G
Osa01LNT0018700.1 1 14777471 G C
Osa01LNT0018700.1 1 14777811 A G
Osa01LNT0018700.1 1 14777861 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0018700.1 osa-miR5827 Translation 4.0 11.604 1 21
Osa01LNT0018700.1 osa-miR159a.1 Translation 5.0 19.605 1 21
Osa01LNT0018700.1 osa-miR159b Translation 5.0 19.605 1 21
Osa01LNT0018700.1 osa-miR159f Translation 4.5 19.605 1 21
Osa01LNT0018700.1 osa-miR2118a Cleavage 4.0 21.388 1 22
Osa01LNT0018700.1 osa-miR2118b Cleavage 3.5 21.388 1 22
Osa01LNT0018700.1 osa-miR2118f Cleavage 4.0 21.388 1 22
Osa01LNT0018700.1 osa-miR2118h Cleavage 4.5 21.388 1 22
Osa01LNT0018700.1 osa-miR2118j Cleavage 4.0 21.388 1 22
Osa01LNT0018700.1 osa-miR2118m Cleavage 4.0 21.388 1 22
Osa01LNT0018700.1 osa-miR2118n Cleavage 3.5 21.388 1 22
Osa01LNT0018700.1 osa-miR2118q Cleavage 3.5 21.388 1 22
Osa01LNT0018700.1 osa-miR5149 Cleavage 5.0 8.93 1 22
Osa01LNT0018700.1 osa-miR5150-3p Translation 5.0 18.507 1 24
Osa01LNT0018700.1 osa-miR419 Cleavage 4.5 24.862 1 21
Osa01LNT0018700.1 osa-miR2118c Cleavage 3.5 21.388 1 22
Osa01LNT0018700.1 osa-miR2118d Cleavage 5.0 21.388 1 22
Osa01LNT0018700.1 osa-miR2118k Cleavage 4.5 21.388 1 22
Osa01LNT0018700.1 osa-miR2118p Cleavage 4.5 21.388 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0018700.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0018700.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0018700.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0018700.1 1 nan Morphological trait Root RM23 RM306
Osa01LNT0018700.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0018700.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0018700.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus