>Osa03LNT0207600.2

GAGCAGGCAAACATGCTGTCTCTCCAGCACATTCACAAATAACAATCTTAGTTACAATGAATAAATGCGGTCTGTGTCGCTGCCTGATTATGAGTTCTATAGAGTACCTAAGTTCGCTGCATAGTCATGTTCGCAAACATTCTCTCAACAAAGAACGAGAGCCTTTGGAACTCGAGAAAAAATAATGTTTGTGCTACATCAGGTGTTGGTTCCTCGTGACATAACTAGAAATCTAAAACACTGATGACTAGCATCTAATCTTCCTTCTGCTTTCCTGATTGTTTTCTGGCACGGGCTGTCAAGCACCGCCCCACAAATTTAAGGACCTCGTCGATGAGAACCACTGGGAAAGCAACTGCTATCACCAAAAGCCATTCATTGAAGCTTAGGGGCACAATACCAAAGACTTGGGCAAGGAATGGCACGTAGAGGATCAAGAAATGCAGCCCGAATGAAACCGACATTGCCAGAAGAAGCCAAGGGTTAACCCACGGAGGCATGCTCAGAAGGCTACCATCCTCCGACAGCGCATTCAGCGAGTTGAACATCTCAATGGCCACCAAGACAGACAGGGAGAGGGTTGTCGCTTTAATTTTGCCGCCCTGGAAGTAATCACATGGGTTCACATCGAAGTTGAATGTACGGGCACCTGCTGTGAATGGTGACACCTTGAAACCCTCCCATGAGGAGCACTGGCCCCAGTTTGAGAGCTGGGAGTACGAGACAAGAGAGTGACCATCACCAGCCAGGTCAATTCCCAGGAAAGAGCCATGTGTGTACCAAATGATAAACACTCCCACTGTGGCAATCCCAACGTACATCCCAATGACCATATAACGGAATAGGATCCATGGAGTGATCAACGAGTCATCACTCCTTCGTGGAGGTTTCTTCATGATATCTTTATCAGGTGGGTTGAACCCCAAAGCCGTTGCAGGAGGACCATCTGTAACAAGATTGACCCACAGAAGTTGCACAGGGATGAGACCTTCAGGAATACCTAAAGCTGACGTTAGAAATATGGAAGCAACTTCCCCGATGTTTGAAGAGATCATATATCTTATAAATGCCTTCATATTGTCGTAGATTGACCTCCCTTCACCAACAGCTGCGACTATTGTACTGAAGTTATCATCTGCAAGAACCATATCTGAAGCTTCTTTTGCAACCTCAGTCCCTGTAATGCCCATAGCAACTCCAATGTCAGCCAACTTCAGAGCTGGTGCATCATTCACTCCATCACCAGTCATAGCAACCACTTCACCATCTTCTTTGAGCAATCTAACTATCTCCTGCTTATGTTTCGGCTCAGCCCTAGAGAAGAGAAGGCCACCTGTTTGCCTTAAGAGTTTCTTCTTATCTGAAAGAGACATGAATTCCTTCCCTGTGAAGCTCTTTGAACTAATATCTTCCGTGGAACCAAAAACTCCAATCTCACGGCATATCGCCTCTGCTGTTTCTTTGTTATCACCAGTAATCACCATAACACGTATTCCAGCAGCTCTACAGTCTTCAATTGCTTTGTGGACTTCTTCTCGGGGAGGATCCCTTAGACCAACAAAACCACAGAATATCAAATTACTCTCTATGGAAGAGTAGTATGAAGGATCAAGTAGATATTTGTGAGCTGCATGCTCTTCACCATCATATGTTGCAAATTCCGCCAAATCCTCCTTGTACGCAAAACCCAAACATCGCAATGCACTAGCAGACATTTCACGAAGTGTTGATAATATGAGCGCCTTGGCACCTTCATCCAGGAGCACAACAGATCCATCAAGCAACTGAATATAGCCACTCCTTTCTAGCAAATTTTCTACAGCTCCCTTGACAAGCAGCAAATTCTTTCCAGAGTCTGCTTTTTTTACAATAACTCCCATTGATTTTCTAGTCCGATCGAACTCCAGAGTAGCTACTCTCTTAGCAGCATTGTTCCACCATTGACAGCACCTTAGCAAATCAGATGAATCCAGGGATGGAGTATATCCACCAGGAAGGCCCATTTTCTCAACCAAAACCTTCAAAGCAGCCTCTGTGGGCATCCCAGTGGCAACATACTGATGCTCAGAGTGAGCAATACTTGCATCATTGCAAACTGCAGCAATCTTAGCAATCATCTGGAGATTTTCATCCATGCTCAAACTTGGCCACTCGTTTATCTTCCCGTCACTTGGATCATAAGTGGTTCCATCAACCTTAAAGCTCCTAAGTGTATCAGGCCACCTCCCAATTGCCACAAGCTTCACCGCTGACATCTGGTTGGTGGTCAATGTTCCTGTCTTATCGGAGCAAATCACTGTAGTGCAACCCAGTGTCTCAACACTTGGCAACTTCCTCACAAGTGCATTCTTTTGTGCCATCTTCCTGGTGCCGAGCGCCAAGCATGTGGTGATAACAGCAGGCAGGCCCTCTGGAATTGCTGCAACAGCCAGTGCCACTGCAATCTCAAAGTAATACGTGCACTTCTCAAATGAGAACTTAAAATTCCTGGGCCACCCATCCACATACTCCCAGGTGAGGAAATACTTAACGTTGATAAGCCAAACCAAGGCACAGATCACCCCAATTATGGCTGTCAGTGCCTCCCCAAACTCATTGAGCTTCTTTTTCAGTGGCGTGTCATCTTCCTCTTGTGAGGCTTCCTGGATCTGGGCATGGATCTTGCCTATTTCAGTGTCCATTCCAGTGCCCGTCACAACACAGACAGCGCTGCCGTTGACAATTGTAGTGCCAGCAAAAACCATACACTCCTTTCCCTGGATGTCTGTGTCCTCCAGCTCGATTTTATGGCTGGTCTTGTTAACCGAAGCAGTCTCACCAGTGAGGGAACCGAAACCCTAGAGGCGGATGGTGGCGGCGAGGAGGCCGAGATGGGGAGAGGAGATTGGTGGCGCAACGCAATGCGGAAGAGAGGAGAAGCTTTTTCTCCCTTCC

Explanation	CPC Score
noncoding (weak)	-0.86609

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0207600.2	3	9638635	A	G
Osa03LNT0207600.2	3	9636581	G	A
Osa03LNT0207600.2	3	9639175	G	A
Osa03LNT0207600.2	3	9640528	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0207600.2	osa-miR5543	Translation	4.5	23.566	1	21
Osa03LNT0207600.2	osa-miR156b-3p	Cleavage	5.0	15.129	1	21
Osa03LNT0207600.2	osa-miR396c-3p	Translation	4.0	13.1	1	21
Osa03LNT0207600.2	osa-miR396c-3p	Cleavage	5.0	24.182	1	21
Osa03LNT0207600.2	osa-miR319a-3p.2-3p	Translation	4.5	18.943	1	20
Osa03LNT0207600.2	osa-miR319a-3p.2-3p	Translation	5.0	15.776	1	20
Osa03LNT0207600.2	osa-miR319b	Translation	4.5	18.943	1	20
Osa03LNT0207600.2	osa-miR319b	Translation	5.0	15.776	1	20
Osa03LNT0207600.2	osa-miR169i-5p.2	Translation	4.5	14.264	1	22
Osa03LNT0207600.2	osa-miR169i-5p.2	Cleavage	4.5	12.204	1	22
Osa03LNT0207600.2	osa-miR444f	Cleavage	5.0	23.802	1	21
Osa03LNT0207600.2	osa-miR1847.1	Cleavage	4.0	20.3	1	21
Osa03LNT0207600.2	osa-miR1877	Cleavage	4.5	18.459	1	24
Osa03LNT0207600.2	osa-miR2870	Cleavage	3.0	17.048	1	21
Osa03LNT0207600.2	osa-miR2905	Translation	4.5	17.655	1	21
Osa03LNT0207600.2	osa-miR1862f	Cleavage	4.5	16.35	1	20
Osa03LNT0207600.2	osa-miR1862g	Cleavage	4.5	16.35	1	20
Osa03LNT0207600.2	osa-miR5075	Cleavage	4.0	22.102	1	21
Osa03LNT0207600.2	osa-miR1855	Cleavage	3.5	22.171	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0207600.2	3	qBM-3	Physiological trait	Source activity	RG369	RG745
Osa03LNT0207600.2	3	qGY-3	Morphological trait	Seed	RG369	RG745
Osa03LNT0207600.2	3	S34(t)	Physiological trait	Sterility	nan	nan
Osa03LNT0207600.2	3	qGW3	Morphological trait	Seed	C706	C12534S
Osa03LNT0207600.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0207600.2	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0207600.2	3	gl3a	Morphological trait	Panicle/flower	C63	RM232

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus