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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0207700.1

GAATTGAAGAACATTTTTTTGTCAATCATTCATTCAGAAACTATGGTGTATCACTACATAACAAAAATTTCTAAGCTAAAGCTGTCCATTTATACATGACATGGAGAATCCATCTGAAAAGGTCCCAGGTCAGACTGTACGTGATGTTTTGGAAAGAGTTCCTTGCCAGGGGCAGCTCATCTTCAGTGTCACCTCCCTCTCCACAGAGCTTCAGGAACCTAACTATATGTGCTGTTCAGAGTTCATTGCCAAGGCCCAGTTCGTCTTCAATGTCGTCTCCCTCTTCGAAGAGTTTGAGGAATCGTAACTGATCCCGCTCCCTCTTCTTCTTCAGCCAGTACTTGTAGCCCCCAAATAATGCAATGATAACAAGGACAGAAGAAAGAACACTGACTATTATGATTACAGTAACGGATGACTTTTTAGTTTCCACTTCTGAGCTAGAATCATGGTTTGCAGAATCACCCGCAGAGGCAGTGCAATTTGGGCATAGGAAAGTAGCATTGAACTGGCCCTCCTTGAAATGGGTGTATTTTCCTTTTTTGAAATCACTAGAACACAGCTCCCATTCATCATACAAATCATGTTTAAATGTATCCTCTTCGTACAAACCACACCTCTTGCATTTCTTTTCTGGAAGTTCTGCCATGATTCTTCGCCCTTAAAGGTGTATATATTGTTTGCATCCTTCACGTCAGGCAAATACACCTTGTCCTCACCATTGCAAAGGAAATACACAGTTGGCTTACTCGGGAACCACTCATGAGTAGTAAATATATCAATGCTGTCAAGTGTGACGAGCCTCTGAGAAAAAATCCCAGGGATCGAGCAGAGGGCGACGAACAGCACGACGACCGGGAGGAGCCGGCGGCCAGGCGAGATGGGCCGCGGCCACCTCATGCTCCAGCCGCGGCGACCGCTGCAGGCTCTCGGCCCCCTAGCGTCGCGTGGCCGCGCAGACGGGTTTCCTCGCTCTTCTCCTCCTCCTCCTCCTCCTTCGCCGCCGTCGTCGTCTCGTCGTCCACCCGATGGAGAGAGAGAAAGAGAAAGGAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.700829
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0207700.1 3 9701907 A T
Osa03LNT0207700.1 3 9703329 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0207700.1 osa-miR812t Cleavage 5.0 17.726 1 24
Osa03LNT0207700.1 osa-miR812u Cleavage 5.0 17.726 1 24
Osa03LNT0207700.1 osa-miR5819 Cleavage 4.0 21.638 1 21
Osa03LNT0207700.1 osa-miR395v Translation 5.0 17.726 1 21
Osa03LNT0207700.1 osa-miR1440a Translation 5.0 19.255 1 20
Osa03LNT0207700.1 osa-miR1858a Translation 3.0 14.226 1 21
Osa03LNT0207700.1 osa-miR1858b Translation 3.0 14.226 1 21
Osa03LNT0207700.1 osa-miR812n-3p Cleavage 5.0 17.726 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0207700.1 3 gl3a Morphological trait Panicle/flower C63 RM232
Osa03LNT0207700.1 3 qBM-3 Physiological trait Source activity RG369 RG745
Osa03LNT0207700.1 3 qGY-3 Morphological trait Seed RG369 RG745
Osa03LNT0207700.1 3 S34(t) Physiological trait Sterility nan nan
Osa03LNT0207700.1 3 qGW3 Morphological trait Seed C706 C12534S
Osa03LNT0207700.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0207700.1 3 qTA3 Physiological trait Eating quality nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus