>Osa03LNT0208200.2

CTGAACTCTGGGTCGTGTAAGCTACTCATTTAGAACATACATTTGCAGTTTTGCATACTATCATCCAAGCAGTCAATTACTAATAGGAAGAAATCTGGCGTTACAGATTAACTTCAGTTTACAGGATCAGAAGGCCAACTGCCGTTCATTACCTATTGAGAATGATTACCAACCATGTATCCATGGCTCATCACAAGATCTACTGAGAATGTGTACTGAAAAAAAAAAGGAACTTGGGGCTGCTTAATTTGAGGTGTTAGTCTACAGGGCAAGTTGGCTCTTATAGATGTACTACTTGCTGAGGTTCTTTTTTCCGTTGAGTTCTGAGAAGGATTACAAATTTAGGGGTGGGGGTGGTTCATGTTAGTGTCATTGGTATAAACAAAGAATTATATGAGACCACACAAACGAGGCTTAGAGCAAAACTGCTTCCCATTTGCTTTCACCAAGGCTACCACTCCAGCCGTCAAACCCGCACAGATAATGGAGGTGATGAAGTGTTGTGCATTCCGTCCAACTTGACTAAGAGTGAATGTGGTGGCAGTAATCCCACCAACTATGATTGCTGAAGCCACAGGAAGATACGTTGCAGATTCAAATCCACCATTTTGAAAAGGAGAAGAGATGCCTTTGCTGACTGTATAGTAACCGCTGATAAGGTCTAGAGCATCTTGTCTCACTCCGTCATGAAAATTATTCAAATAATATCGTGAAAGAGCACTCATGCCATCTTTAATCAATCCAGGTAATGTCTGCCTTCCATACCTCACTAGGTCCCCCTTTAGTGCATAAGAACCAGCATATTCCAGGCTTAGCTCATCTCCATGTTCAACCCACATTTTTTTAAAGGTGTCACTAATGTCTCCAGATTGGGAAATGCTGCCAGATGATGATAGAGCCCCCATGCGCTGCAGCTGTAAGTCCAACGATTTTCTAGCAAGGAAGCTCTGAGTTACATTTGTACGGTCCAGACAATCTATGCAATTGGATCTAACTATGCCGCTTTGCTCCAGGAATATCTCTCCTTTGGAGTTGATAAGAAAATATCTGCTCAGCCTTGTTTCTGAATAGCTTCTTCAATTTGATTGTATAGAACTTGCAGATTATCAAAGTTCCCTCCACGACAGATATGATGGAAATCAAAATGCACATACCTGATGTTAGGAATCCTCTCCATTTCAGCAGCAAATGCATTGCTTAAATTTCCTTCATCTCCTTGCTTATCTGTCAAATCAACAACAACTGTGTCCCCATATCTTTGTGAAAGATCATGAAAGTGGCGTTGGACAACCTTCGGCGTTTCCTCATGTTCAATTATGTTGAGACATGGTTTGTAGCTTAAATCCACTATTTGCTCCCAGAGAAGTGGAATGGAGCCTCGAACCTGTATAAATGAAGACATCAAACCTTCATACTCTGCCAGCTGTTCTGTCTCAACAAAATTAGCTGTGGCTCCTTCAAGATTTGCACCTCTCCTCCACATTCTTGTTCCTAGACGCCTGTTGCATCTACGTGAGAACAACGTTATTCTGACAGGTGCCTCCTTTAAGGAAAATTGCGCTGTCTGAAAACGTTAAATAGTCAAGGATATAGCAAATTGCTAAAGCATGTTTCTCTGCTGATGATTGAAAAACAATGAGCACTGTATCACACATTTTCAACAACTAAACACAGATAATCCGTATATCCTATACTGTCCTCCTGGGTACCAAAAGTCCAAAACAGAGAAACCGATGTTACATGTAAAAGGTAAATGCTCAATACACACCAGTGAAAAGTAGAGATAAGAATAAAAAAATAAGCAGTGAAAATATCTGAGATTTTGGATATTTCCTTGGACCAGTGGGATGATAAATTCATCAAGTTTTGCTTCAATAAACTCCTCTAGCAAATTTTTGTTCCAAACGAAACGTGGGTCAGCCTGTTTCCAGAGTGGCTTATGTACCCGCCCAGCAGGCAACTTTGATGCCCTCTGCAAGTTCAGTGTCAAATCCCTGTCATAAGAGTAATAAAGCCCATGAGTAGTTTCTGCGATTTTCAGGAGAGACATGAAATATGCCTCATCCCTTTTTACTCAATTTTGTCATACTTCTTGTGCAGTTAAATGCTTTATAGCCTCGTTGCAGCATAAGAATTTCATCGAGTTCACATTGTAAACAGGGGATCCCTGATATGAACCAGCGTCCCTTTGAGAAGTGATGACAAGTACATAGCTTCCGGCGAGCAACCTGATCACGCCAGCCACTCCGTAAATCTTCGACACCCTACAATCGCTTCCCGCAGCCGCTTCCTCTGCGGAGAGGGGGCGGAGGGAGCCGTTGGAGCGGGAGACGGCGAAGGCGCCGCCGCCGTCGACCGAGCGGATCACGTAGCGGTCGCGGAACTCCCGCAGCTCGAGCTCGCGGCTGCAGGCGCCGGGGCGGAGGGGCTCCTCGGCGAGCAGCGGCGCCTCGTCGGCGGCATCCGTCGCCATCGGCGGCGAGGCGCGTGGCGTGTGTGTGTGCGCGCTCGGTTTACGTTTGGATCGGTGGCCCGGCCCCCCGGATCCGTGACGGGAGAAGGAAAAGGGGAACGAGAAA

Explanation	CPC Score
noncoding	-1.18326

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0208200.2	3	10091045	T	C
Osa03LNT0208200.2	3	10091857	T	A
Osa03LNT0208200.2	3	10091990	C	A
Osa03LNT0208200.2	3	10093447	A	G
Osa03LNT0208200.2	3	10094188	C	A
Osa03LNT0208200.2	3	10096893	A	G
Osa03LNT0208200.2	3	10096976	C	G
Osa03LNT0208200.2	3	10095656	T	C
Osa03LNT0208200.2	3	10096171	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0208200.2	osa-miR408-5p	Cleavage	4.0	14.93	1	21
Osa03LNT0208200.2	osa-miR815a	Translation	3.5	16.528	1	21
Osa03LNT0208200.2	osa-miR815b	Translation	3.5	16.528	1	21
Osa03LNT0208200.2	osa-miR815c	Translation	3.5	16.528	1	21
Osa03LNT0208200.2	osa-miR444d.3	Cleavage	5.0	16.327	1	21
Osa03LNT0208200.2	osa-miR5156	Cleavage	4.5	7.6	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0208200.2	3	qGY-3	Morphological trait	Seed	RG369	RG745
Osa03LNT0208200.2	3	nan	Morphological trait	Seed	RM251	RM554
Osa03LNT0208200.2	3	nan	Morphological trait	Seed	RM251	RM554
Osa03LNT0208200.2	3	qLVG3	Resistance or Tolerance	Cold tolerance	RM251	RM282
Osa03LNT0208200.2	3	ccs3	Physiological trait	Source activity	RM282	RM251
Osa03LNT0208200.2	3	dcf3	Physiological trait	Source activity	RM282	RM251
Osa03LNT0208200.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0208200.2	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0208200.2	3	qBM-3	Physiological trait	Source activity	RG369	RG745

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus