© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0208500.1
GCCAACCAAGATCAAAGCATGCAGAATGCGGCTTAGAACCTCGTAAACAACGTGGACCACTTCGTCCTAGAGTGGATGAAGCAGCTCCGCGAGCTCGCCTACGACTCGGAGGACTGCATCGACTAATACCGCTCGTCCAGCTACAGCATATGAAGAATAAGGCCATCTCTAGCCCCCTCCTCCTTCTCCGCATGGCGGCAACGTCGCGTACAGCTCGTAGAGACCACCTACGTATGCTGCTCCCCGGTCTCCTTCTCCAGGTGCAAGAGCGTCATCATTTTCACGGGGAACTCGTTTTACGTATCTTCCCAATCTTCTCAATCCCCTATTCCTCAAACTCACCCTTTGTCATTACGTAGGTAAACAGAGTGGAAAAATCATTCTGTCATAAGAGTACCAAATCTTTTCATTTTGTTGAAGAGCATGGCCATCCACAAGCAATAATCCATGAAGAGACCTTGGTTGCCTGTAAGTGAGAAGCTATAATGACACAGAGACAGGCCAACTGGCCAAGCGAGGTCCTCTAAAGTTCTTCAGGTTCCACTTCTTCTTTTTTTAACGCAATAGAGTGCACATGAAACAAAAGCATTAGGACGATAATCTCTTCATTGAAGGTATTGTAATTAGTTATGAAACACTACATTACTTCCAAAGTCATTAAGAAAAAGATAGCTTCAACAAAATGTCATACTAAACAAATTAGTTCAATGTTTATCCTATAAAACGTAATCTGGTAGTTTTTTTCTTCTGTCAAGCTAATAACACATTTTTTTTTACAAATAAATTCTATGCCTCAGCAATAATCACAACACATTGTGGCACAAATTTGGTTCTAGTGTGGGTAATACTCATGGATTTGACATAACATTTTACACAACATCACTAAAAGATTATATTGGCCAATGGAATCAAACTTGTTGCCTCCGCAAGACCACCACAACATCTTCTATAACTTTGCATGATCAAACTGTGCAAACCAACATTAGGATGGTCTCAATTCATTCACAGGAACAGAGTATCGTGCCTTCCATTTCATCCATGTAAAAAAATCAATTGCACTCCTAGGACTGCTATGGGAATACGTGTACTACATTTTTCTCTATAAATGGTGCATCTTGTTCTAGAAATTGTTACACCATGTCCACTTTGTCAGCTGTGTGCTTCAAAATCTTAGGTGTCGACACTTTCTCTGGATTTGCCGAGTTCGTTTCCTGGTTAACAACAATAATTAGGTATGATATCCATGAGTGTTCCACTTTGTTGATCATACACTTAAACCCGATCTGCGGCAAATGAAAGCAGGCTCTACCTAACACTTGTCAGAGGATGCTTAAAATGTCACAGAAAGAGCAGTAATTAGTTTAGCATAAATGTGTAATCAACAATTAAGCAAAAAGAAGGCATAGAATTAATTTTGGTCATTCAAGAGAAAAATATTTATTGTAGAAAAACTGAATGAGGTAATTATGTTTCTGGTTTGTAACAATTTCCAAGAGCTTAGCACCTATCAATATCACTTAGCATGCAAAAACAACATCTGCCTGTGAGTATTAAGCCAACATAATAGCAATAAGCTTGCAACCTTTCTAAAATATGAACTAATACCAAAACGATACCAACATTATCACCAGCTTTTCAATCAGCAATTCAGCACCATAACACCAGGCCTAATCAAGCAATTCTCATGTGCATATTCAATTAATCTACAGATAAAAAACTACATATGTGAGAGGTACGGTTGTACACATAATTTATATATGTTTGCTCACATAAACAGAGTGTGTTGAGATGTTAGTAGTGGAGTAGAGTAGGGTAAAGCATTTTTTATAGAAAAATGATTTGCTCCGAAAAATAACGAAAGGAATGTGCTAAGTGGAAATTGTTTGACTCGCCCAAGAGCAGTCCTGTCCTTGACTGATAAAAGGGGACCAAACCCATACAACCATGGAAAAATGGGGGGGAAACAGAGATATGGGGAGGGACAATACATTTTTATTACTAACCATTTATGTTCTAATCAAGGAGCATGAGCAGTTTGGTGATCAGGAAGCTATGTTATTCCGAAAGATAAGAAAGGAAAATTAAGCCAAAATAATACCATTTCCACAAGATTGACTAAGATCAAATATTTATAAAGCTTACATTGCTAGACATGAATCAGGCTGGAAAAAAAATGTAGCTCATCCCAGATTAGCTACAAATATGTACCCCAGCTATACCTTTCCATCTAGAGGATAGCAAACCATAGTTGGCTGAGAGTTACCTCATGCATTTTTTTTTCATGGCATATGTTTAAGCTGAAGATAAGGATCATATCAAAGCAGTAGACATTTAGAGTAATAATAATTAAGGGTTATAGGATTTGAACCATAAGTGTTTGTTCATAGTCTGGATTGCAGTTTTATGTAAAGCAAAAGGATTCTAGGAAGCAAACGCCATATATATGGTAGCGGCTATTCCAGGATTCTAGTCGTGGCTGATGTGTGGGGACTCAGCAGCGTCCACGCCGGCAGCAAACAGTACGGGACAAGTAGACCTGAAATGAGAGCAGAAACAAACCAACTATGCTTCCACCAATTTCTACACCTATAAAACAAGGTAAATTAATCATCAAAAGATCACAAACATTTAGTATGCGTCCGACTTGACCAGCACACTATCACACAGCCTATAGTATAACAACTGCAGTGTTAACATGTCACTTGCATAAGAGCAAAGCTGCCCTGCTGAAAGCACAGAATGAGAAATGTCACTAAGCAGCAGCAACAGCAAGAGAATGTTAAAAAAAAAGTTCATATATAAGCAAAGGGCTAATCATATAGTGCAAAATTAGCCCATTTGAAAGCCTTCACAACAAACTGGATTTTTATCTACTCACTGAACAAATATCTTGTACTATATAAAATAAATAAGTACTTTGTTTCAAAAGGGGACAAATGTCTTGCAAGTAACTGTGCTACTCTCCTATAAACTCCATCATACACACGAGTGTTTTTCATCTTCCAAAATCACTGGATGAATATTTAGATTTCAACTTAATTTGAAGAAAAGCAAGAACAAGTAAGGAAAACTAAGTAAGGAAAACTTTTGCTTTAAGGTTGCAGTGCCCAGATTGATTAACTGTATACTTGCTTTACCAGCGAGAACCAATAACTAATAATAGAGGTTATATTTTAAAAACTCCATATATCTAGCTTGTCTTTAAAATAATTACTAACTTTTACCCAAAATTCAGAGATAGTGTGCAAATATTGTGCAGCCATGTAGGATTCAAACGCCAAATACATAGTATTTTACAAACTTTCAAATGATATTTTCAATTTTACCTTGAATGAAAAGGGAGGTGGAGCTAAAAAAATAGTACTCAATAGTTGGGGGGACATAGCTTCCAAATGAAGGGCTATGCAGATTGCCATGGTTCACATTCCTCGAGGCTGCCCTGTATCCTGGCGATCTGTCCCTGCAGCTCTTCAAGCAGGAGCCACTCCTTTCCATCCTTCCCTGCGTTAGAAGGTCGCAGTTGGCCGAGCTTCTTCCCTAGAATTACAAGGTCTGATGGAGGTGCGAAAGATAAGCTTCGGCCGTGGCCTCATGCTTGTCACCAGTGGGGAGGAGGGCATGTCTGAGACATTGCTGCCATCATCGCCAAGCTGCTGCCGCTGCTGAGCTCAACAGATCCGGCGGCCTTGATCTGTCACATCCAACTTCCCCACCGGCTCTGGATCATCCCAAGCCTCCGGGTGATCGGATCTGCCGGCAGGGAGATCGTGGTTGCCGGATCAGGCGGGCACGACCTCCCCTCCACCAGAACCTGCCTCGCGGTGGCAAGAGGGAGGTGCGGTGATGCACCTGGGTGCTAGAAGAGTGCGGGAGGCGCGGCGGCGGCGACGCAGTGAGGAGAGTTTGCGGCGCGGCGTAGCGGGGGCGGGAGGCGCGAGGAGGAGGAGGAGGCGGCGGCGTGGGCTAGGGAGAGCGCGCGAGAGAGGA
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0208500.1 | 3 | 10234463 | A | G |
| Osa03LNT0208500.1 | 3 | 10236237 | C | A |
| Osa03LNT0208500.1 | 3 | 10236307 | A | C |
| Osa03LNT0208500.1 | 3 | 10237527 | C | A |
| Osa03LNT0208500.1 | 3 | 10238416 | G | A |
| Osa03LNT0208500.1 | 3 | 10238515 | A | G |
| Osa03LNT0208500.1 | 3 | 10239880 | C | G |
| Osa03LNT0208500.1 | 3 | 10240402 | C | A |
| Osa03LNT0208500.1 | 3 | 10234563 | C | A |
| Osa03LNT0208500.1 | 3 | 10234648 | A | G |
| Osa03LNT0208500.1 | 3 | 10233523 | A | T |
| Osa03LNT0208500.1 | 3 | 10233836 | T | C |
| Osa03LNT0208500.1 | 3 | 10233360 | A | G |
| Osa03LNT0208500.1 | 3 | 10234843 | T | C |
| Osa03LNT0208500.1 | 3 | 10236806 | C | T |
| Osa03LNT0208500.1 | 3 | 10237326 | A | G |
| Osa03LNT0208500.1 | 3 | 10237352 | T | C |
| Osa03LNT0208500.1 | 3 | 10233419 | A | G |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa03LNT0208500.1 | DTM_#DNAt_MULE_japo_Os0166 | Chr3 | - | 10232854 | 10234697 | 1366 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0208500.1 | osa-miR812r | Translation | 4.5 | 17.503 | 1 | 24 |
| Osa03LNT0208500.1 | osa-miR5808 | Cleavage | 4.0 | 10.701 | 1 | 24 |
| Osa03LNT0208500.1 | osa-miR5143b | Cleavage | 4.5 | 11.745 | 1 | 24 |
| Osa03LNT0208500.1 | osa-miR5834 | Cleavage | 3.5 | 8.932 | 1 | 21 |
| Osa03LNT0208500.1 | osa-miR156a | Cleavage | 4.5 | 9.388 | 1 | 20 |
| Osa03LNT0208500.1 | osa-miR156b-5p | Cleavage | 4.5 | 9.388 | 1 | 20 |
| Osa03LNT0208500.1 | osa-miR156c-5p | Cleavage | 4.5 | 9.388 | 1 | 20 |
| Osa03LNT0208500.1 | osa-miR156d | Cleavage | 4.5 | 9.388 | 1 | 20 |
| Osa03LNT0208500.1 | osa-miR156e | Cleavage | 4.5 | 9.388 | 1 | 20 |
| Osa03LNT0208500.1 | osa-miR156f-5p | Cleavage | 4.5 | 9.388 | 1 | 20 |
| Osa03LNT0208500.1 | osa-miR156g-5p | Cleavage | 4.5 | 9.388 | 1 | 20 |
| Osa03LNT0208500.1 | osa-miR156h-5p | Cleavage | 4.5 | 9.388 | 1 | 20 |
| Osa03LNT0208500.1 | osa-miR156i | Cleavage | 4.5 | 9.388 | 1 | 20 |
| Osa03LNT0208500.1 | osa-miR156j-5p | Cleavage | 4.5 | 9.388 | 1 | 20 |
| Osa03LNT0208500.1 | osa-miR156k | Cleavage | 3.5 | 9.388 | 1 | 21 |
| Osa03LNT0208500.1 | osa-miR168a-5p | Cleavage | 3.5 | 21.449 | 1 | 21 |
| Osa03LNT0208500.1 | osa-miR417 | Translation | 4.0 | 16.94 | 1 | 21 |
| Osa03LNT0208500.1 | osa-miR815a | Cleavage | 1.5 | 5.689 | 1 | 21 |
| Osa03LNT0208500.1 | osa-miR815b | Cleavage | 1.5 | 5.689 | 1 | 21 |
| Osa03LNT0208500.1 | osa-miR815c | Cleavage | 1.5 | 5.689 | 1 | 21 |
| Osa03LNT0208500.1 | osa-miR1439 | Cleavage | 4.0 | 15.774 | 1 | 21 |
| Osa03LNT0208500.1 | osa-miR1856 | Cleavage | 4.5 | 12.961 | 1 | 21 |
| Osa03LNT0208500.1 | osa-miR1858a | Translation | 5.0 | 11.122 | 1 | 21 |
| Osa03LNT0208500.1 | osa-miR1858b | Translation | 5.0 | 11.122 | 1 | 21 |
| Osa03LNT0208500.1 | osa-miR1860-3p | Cleavage | 4.0 | 23.956 | 1 | 22 |
| Osa03LNT0208500.1 | osa-miR1878 | Cleavage | 4.5 | 16.83 | 1 | 24 |
| Osa03LNT0208500.1 | osa-miR1882e-3p | Translation | 5.0 | 8.656 | 1 | 24 |
| Osa03LNT0208500.1 | osa-miR2094-5p | Cleavage | 4.0 | 11.641 | 1 | 21 |
| Osa03LNT0208500.1 | osa-miR2118i | Cleavage | 4.5 | 22.112 | 1 | 22 |
| Osa03LNT0208500.1 | osa-miR2874 | Translation | 4.5 | 24.04 | 1 | 24 |
| Osa03LNT0208500.1 | osa-miR3980a-3p | Translation | 5.0 | 18.445 | 1 | 21 |
| Osa03LNT0208500.1 | osa-miR3980b-3p | Translation | 5.0 | 18.445 | 1 | 21 |
| Osa03LNT0208500.1 | osa-miR5143a | Cleavage | 4.5 | 11.745 | 1 | 24 |
| Osa03LNT0208500.1 | osa-miR5338 | Cleavage | 4.0 | 11.046 | 1 | 21 |
| Osa03LNT0208500.1 | osa-miR5518 | Translation | 5.0 | 17.66 | 1 | 21 |
| Osa03LNT0208500.1 | osa-miR2275d | Cleavage | 5.0 | 18.011 | 1 | 22 |
| Osa03LNT0208500.1 | osa-miR2868 | Cleavage | 4.0 | 9.907 | 1 | 20 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0208500.1 | 3 | qLVG3 | Resistance or Tolerance | Cold tolerance | RM251 | RM282 |
| Osa03LNT0208500.1 | 3 | ccs3 | Physiological trait | Source activity | RM282 | RM251 |
| Osa03LNT0208500.1 | 3 | dcf3 | Physiological trait | Source activity | RM282 | RM251 |
| Osa03LNT0208500.1 | 3 | qGL3-1 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0208500.1 | 3 | qOE3-1 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0208500.1 | 3 | qTA3 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0208500.1 | 3 | qGY-3 | Morphological trait | Seed | RG369 | RG745 |
| Osa03LNT0208500.1 | 3 | qBM-3 | Physiological trait | Source activity | RG369 | RG745 |
| Osa03LNT0208500.1 | 3 | nan | Physiological trait | Germination/dormancy | nan | nan |
| Osa03LNT0208500.1 | 3 | nan | Morphological trait | Seed | RM251 | RM554 |
| Osa03LNT0208500.1 | 3 | nan | Morphological trait | Seed | RM251 | RM554 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)