>Osa03LNT0208500.2

GCCAACCAAGATCAAAGCATGCAGAATGCGGCTTAGAACCTCGTAAACAACGTGGACCACTTCGTCCTAGAGTGGATGAAGCAGCTCCGCGAGCTCGCCTACGACTCGGAGGACTGCATCGACTAATACCGCTCGTCCAGCTACAGCATATGAAGAATAAGGCCATCTCTAGCCCCCTCCTCCTTCTCCGCATGGCGGCAACGTCGCGTACAGCTCGTAGAGACCACCTACGTATGCTGCTCCCCGGTCTCCTTCTCCAGGTGCAAGAGCGTCATCATTTTCACGGGGAACTCGTTTTACGTATCTTCCCAATCTTCTCAATCCCCTATTCCTCAAACTCACCCTTTGTCATTACGTAGGTAAACAGAGTGGAAAAATCATTCTGTCATAAGAGTACCAAATCTTTTCATTTTGTTGAAGAGCATGGCCATCCACAAGCAATAATCCATGAAGAGACCTTGGTTGCCTGTAAGTGAGAAGCTATAATGACACAGAGACAGGCCAACTGGCCAAGCGAGGTCCTCTAAAGTTCTTCAGGTTCCACTTCTCCGCAAGACCACCACAACATCTTCTATAACTTTGCATGATCAAACTGTGCAAACCAACATTAGGATGGTCTCAATTCATTCACAGGAACAGAGTATCGTGCCTTCCATTTCATCCATGTAAAAAAATCAATTGCACTCCTAGGACTGCTATGGGAATACGTGTACTACATTTTTCTCTATAAATGGTGCATCTTGTTCTAGAAATTGTTACACCATGTCCACTTTGTCAGCTGTGTGCTTCAAAATCTTAGGTGTCGACACTTTCTCTGGATTTGCCGAGTTCGTTTCCTGGTTAACAACAATAATTAGGTATGATATCCATGAGTGTTCCACTTTGTTGATCATACACTTAAACCCGATCTGCGGCAAATGAAAGCAGGCTCTACCTAACACTTGTCAGAGGATGCTTAAAATGTCACAGAAAGAGCAGTAATTAGTTTAGCATAAATGTGTAATCAACAATTAAGCAAAAAGAAGGCATAGAATTAATTTTGGTCATTCAAGAGAAAAATATTTATTGTAGAAAAACTGAATGAGGTAATTATGTTTCTGGTTTGTAACAATTTCCAAGAGCTTAGCACCTATCAATATCACTTAGCATGCAAAAACAACATCTGCCTGTGAGTATTAAGCCAACATAATAGCAATAAGCTTGCAACCTTTCTAAAATATGAACTAATACCAAAACGATACCAACATTATCACCAGCTTTTCAATCAGCAATTCAGCACCATAACACCAGGCCTAATCAAGCAATTCTCATGTGCATATTCAATTAATCTACAGATAAAAAACTACATATGTGAGAGGTACGGTTGTACACATAATTTATATATGTTTGCTCACATAAACAGAGTGTGTTGAGATGTTAGTAGTGGAGTAGAGTAGGGTAAAGCATTTTTTATAGAAAAATGATTTGCTCCGAAAAATAACGAAAGGAATGTGCTAAGTGGAAATTGTTTGACTCGCCCAAGAGCAGTCCTGTCCTTGACTGATAAAAGGGGACCAAACCCATACAACCATGGAAAAATGGGGGGGAAACAGAGATATGGGGAGGGACAATACATTTTTATTACTAACCATTTATGTTCTAATCAAGGAGCATGAGCAGTTTGGTGATCAGGAAGCTATGTTATTCCGAAAGATAAGAAAGGAAAATTAAGCCAAAATAATACCATTTCCACAAGATTGACTAAGATCAAATATTTATAAAGCTTACATTGCTAGACATGAATCAGGCTGGAAAAAAAATGTAGCTCATCCCAGATTAGCTACAAATATGTACCCCAGCTATACCTTTCCATCTAGAGGATAGCAAACCATAGTTGGCTGAGAGTTACCTCATGCATTTTTTTTTCATGGCATATGTTTAAGCTGAAGATAAGGATCATATCAAAGCAGTAGACATTTAGAGTAATAATAATTAAGGGTTATAGGATTTGAACCATAAGTGTTTGTTCATAGTCTGGATTGCAGTTTTATGTAAAGCAAAAGGATTCTAGGAAGCAAACGCCATATATATGGTAGCGGCTATTCCAGGATTCTAGTCGTGGCTGATGTGTGGGGACTCAGCAGCGTCCACGCCGGCAGCAAACAGTACGGGACAAGTAGACCTGAAATGAGAGCAGAAACAAACCAACTATGCTTCCACCAATTTCTACACCTATAAAACAAGGTAAATTAATCATCAAAAGATCACAAACATTTAGTATGCGTCCGACTTGACCAGCACACTATCACACAGCCTATAGTATAACAACTGCAGTGTTAACATGTCACTTGCATAAGAGCAAAGCTGCCCTGCTGAAAGCACAGAATGAGAAATGTCACTAAGCAGCAGCAACAGCAAGAGAATGTTAAAAAAAAAGTTCATATATAAGCAAAGGGCTAATCATATAGTGCAAAATTAGCCCATTTGAAAGCCTTCACAACAAACTGGATTTTTATCTACTCACTGAACAAATATCTTGTACTATATAAAATAAATAAGTACTTTGTTTCAAAAGGGGACAAATGTCTTGCAAGTAACTGTGCTACTCTCCTATAAACTCCATCATACACACGAGTGTTTTTCATCTTCCAAAATCACTGGATGAATATTTAGATTTCAACTTAATTTGAAGAAAAGCAAGAACAAGTAAGGAAAACTAAGTAAGGAAAACTTTTGCTTTAAGGTTGCAGTGCCCAGATTGATTAACTGTATACTTGCTTTACCAGCGAGAACCAATAACTAATAATAGAGGTTATATTTTAAAAACTCCATATATCTAGCTTGTCTTTAAAATAATTACTAACTTTTACCCAAAATTCAGAGATAGTGTGCAAATATTGTGCAGCCATGTAGGATTCAAACGCCAAATACATAGTATTTTACAAACTTTCAAATGATATTTTCAATTTTACCTTGAATGAAAAGGGAGGTGGAGCTAAAAAAATAGTACTCAATAGTTGGGGGGACATAGCTTCCAAATGAAGGGCTATGCAGATTGCCATGGTTCACATTCCTCGAGGCTGCCCTGTATCCTGGCGATCTGTCCCTGCAGCTCTTCAAGCAGGAGCCACTCCTTTCCATCCTTCCCTGCGTTAGAAGGTCGCAGTTGGCCGAGCTTCTTCCCTAGAATTACAAGGTCTGATGGAGGTGCGAAAGATAAGCTTCGGCCGTGGCCTCATGCTTGTCACCAGTGGGGAGGAGGGCATGTCTGAGACATTGCTGCCATCATCGCCAAGCTGCTGCCGCTGCTGAGCTCAACAGATCCGGCGGCCTTGATCTGTCACATCCAACTTCCCCACCGGCTCTGGATCATCCCAAGCCTCCGGGTGATCGGATCTGCCGGCAGGGAGATCGTGGTTGCCGGATCAGGCGGGCACGACCTCCCCTCCACCAGAACCTGCCTCGCGGTGGCAAGAGGGAGGTGCGGTGATGCACCTGGGTGCTAGAAGAGTGCGGGAGGCGCGGCGGCGGCGACGCAGTGAGGAGAGTTTGCGGCGCGGCGTAGCGGGGGCGGGAGGCGCGAGGAGGAGGAGGAGGCGGCGGCGTGGGCTAGGGAGAGCGCGCGAGAGAGGA

Explanation	CPC Score
noncoding	-1.23198

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0208500.2	3	10236237	C	A
Osa03LNT0208500.2	3	10236307	A	C
Osa03LNT0208500.2	3	10237326	A	G
Osa03LNT0208500.2	3	10237352	T	C
Osa03LNT0208500.2	3	10237527	C	A
Osa03LNT0208500.2	3	10238416	G	A
Osa03LNT0208500.2	3	10238515	A	G
Osa03LNT0208500.2	3	10239880	C	G
Osa03LNT0208500.2	3	10240402	C	A
Osa03LNT0208500.2	3	10233360	A	G
Osa03LNT0208500.2	3	10233419	A	G
Osa03LNT0208500.2	3	10233523	A	T
Osa03LNT0208500.2	3	10234463	A	G
Osa03LNT0208500.2	3	10234843	T	C
Osa03LNT0208500.2	3	10236806	C	T
Osa03LNT0208500.2	3	10233836	T	C
Osa03LNT0208500.2	3	10234648	A	G
Osa03LNT0208500.2	3	10234563	C	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa03LNT0208500.2	DTM_#DNAt_MULE_japo_Os0166	Chr3	-	10232854	10234697	1366

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0208500.2	osa-miR5808	Cleavage	4.0	10.701	1	24
Osa03LNT0208500.2	osa-miR5143b	Cleavage	4.5	11.745	1	24
Osa03LNT0208500.2	osa-miR5834	Cleavage	3.5	8.932	1	21
Osa03LNT0208500.2	osa-miR168a-5p	Cleavage	3.5	21.449	1	21
Osa03LNT0208500.2	osa-miR417	Translation	4.0	16.94	1	21
Osa03LNT0208500.2	osa-miR815a	Cleavage	1.5	5.689	1	21
Osa03LNT0208500.2	osa-miR815b	Cleavage	1.5	5.689	1	21
Osa03LNT0208500.2	osa-miR815c	Cleavage	1.5	5.689	1	21
Osa03LNT0208500.2	osa-miR1439	Cleavage	4.0	15.774	1	21
Osa03LNT0208500.2	osa-miR1856	Cleavage	4.5	12.961	1	21
Osa03LNT0208500.2	osa-miR1860-3p	Cleavage	4.0	23.956	1	22
Osa03LNT0208500.2	osa-miR1878	Cleavage	4.5	16.83	1	24
Osa03LNT0208500.2	osa-miR2094-5p	Cleavage	4.0	11.641	1	21
Osa03LNT0208500.2	osa-miR2118i	Cleavage	4.5	22.112	1	22
Osa03LNT0208500.2	osa-miR2868	Cleavage	4.0	9.907	1	20
Osa03LNT0208500.2	osa-miR2874	Translation	4.5	24.04	1	24
Osa03LNT0208500.2	osa-miR3980a-3p	Translation	5.0	18.445	1	21
Osa03LNT0208500.2	osa-miR3980b-3p	Translation	5.0	18.445	1	21
Osa03LNT0208500.2	osa-miR5143a	Cleavage	4.5	11.745	1	24
Osa03LNT0208500.2	osa-miR5338	Cleavage	4.0	11.046	1	21
Osa03LNT0208500.2	osa-miR5518	Translation	5.0	17.66	1	21
Osa03LNT0208500.2	osa-miR2275d	Cleavage	5.0	18.011	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0208500.2	3	qBM-3	Physiological trait	Source activity	RG369	RG745
Osa03LNT0208500.2	3	qGY-3	Morphological trait	Seed	RG369	RG745
Osa03LNT0208500.2	3	nan	Morphological trait	Seed	RM251	RM554
Osa03LNT0208500.2	3	nan	Morphological trait	Seed	RM251	RM554
Osa03LNT0208500.2	3	qLVG3	Resistance or Tolerance	Cold tolerance	RM251	RM282
Osa03LNT0208500.2	3	ccs3	Physiological trait	Source activity	RM282	RM251
Osa03LNT0208500.2	3	dcf3	Physiological trait	Source activity	RM282	RM251
Osa03LNT0208500.2	3	qGL3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0208500.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0208500.2	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0208500.2	3	nan	Physiological trait	Germination/dormancy	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus