© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0208600.1
CAAACAAACTGGCAATTTTATAAGAGAATAAAAGGCACATATCCATTGCACTAAATTCTTGTAAGACCATCCAAGTGCTAATGCCTCCATTGAATCTATCGCTGCTTCTTGACAAGTACAGACTCGCGACTCCATTATTTGTTGAATATCCCCACAACCCAACACACTCATATGTAAATCAGATAACCACACTTATTCCAAAGCTTAATTTCTCTTGACAATTGCAATATAACAAGAATGATAGGAGTGACATGTGTAGCAAACACCTACCGGGTGTCAGGATTTGTCCTTGACATGACCAGGTTTTTGGCAGCATGTCATGTGGCTTATCCTGAAATAGTGTGTTGGTTCCCTCTGTTAGCTGATAAACAGGAGCCTTGGGCTTCGGCTGCTCAATAACAATGGCCTGTAAGGTGAGGACCATTGCAACCACTCAGGCTGCGTTCTGGAGCATGCATCTTCTCACCTTAGCTGGGTTGATAACACTTGCCTTGATCGAGTTCTCATACTTAATGTTCATCGCATTGTAACTGACTTTACACTCACTGTCCTCGATCTTCTGAACCACCACTTCCCCTCCAATTCAGCATTATGGGCAAGCAGTGATGCAGGAGCAACCAAAGCCTTCACTTCATTATCTCCTCTGGTAATTAGCACTGATGAGCTGTTGAGTTCCATTGGCAGATCATGGCCTAAGAGCAAACACATGTAGGCATGAAATGATCAAATTTATGTGCCTAGATAAATGAAGATGCAAACCAAATTTTAAGAAACAAGCATGCCGGTAAAAGGGAAGCTAATACAGCATGGCAAAAGGAAAATCCTCCATTTTTTTTTTGCCACAAGCAAAATTAAGGAACAAAAACAAAAAGCGTGGTCAGTCATTCCATATTAGTTTGTAATAGCAAAATGTGGTAATTATATTTGTAAGTTTTACTTGCATTTTGGTATTCTAAGCACAAAAATACAATCTACAAGCAACGTATATGTTCTGGCTTGACAGAGAAGTTGTGAGCTACTATACTGGTCCCTTCTTGTCAAGAATAAACATGCCTCTTCATAAATTTGTTTTCTCCCTAGATTTAGTGGAAACCAATGCAATCTGTTCGTTTGATATAATATTGCCATTAGAGCAATCAATGATAGAATTGGTAGATGGCTGAACTTTCTCACTGATTTTCTCATGCACTGTGAAAACACACATGCATTCCTCTATGTTCTTCTATATAGAGTCAACCTCTTTTTTTTTCTTTGCAGAACTGAACATATTTTTTTTCTTTGCAAGCATGAACATTAATTAGTAAAAACTATCTACTGCAACCAAAGTATTTATTATATCCTTTAAGCTACACATTGAAACATAACAATTGAAAACGACATAACAATCAGAAAAATATGATGGAGTTTTACCTTTGAAAACAACAAAATAAAGGGAGTGAACACATAGGCGCTTCAAAAATTTAGAATAAAGTGCCACACCAGATGATCAAGAATTAGATCATATACGAAATAGTAAGAATTAGATCATAGCAATTAAGTAGTCCTGTTCAGCAACAAATTTTGCTGTCAAATTAGAGAGCACCATGAGTCGGTGACTGATAGTACCAAAACATTTCACGCATTACCATTCAGATTATGAGTTTGGCAACAATGACTTCTGATGCTCAGTGCTACAACAACCATCTTGTTGTAGCCATACAAAGAGAACTCCTACAATGTCTTCTGTTCTTCAAGCAATCCATTTTTTCAATCTTCCAGATTGGCTGGTCTTCGATGCAGAGGCAGTAAGCTGTAGAAACATCATCAGATTGTACCAAAAAGAATGCTTATTGTTGTGGGTGCACGGAGAAGCAATGCATACTGGATTTATGCAAATATTAAGTTGCATTTGAGTTCTGTACAAAATAATAAAACCCAGTGTTCATTCAGCTCCACTGGAACTATGCGGGAAAGGATGAAATGCATCTGAATTTGCTGTTATGGGTGGAGAGGGAGCATATATGTTTTGAAGCCAGCTATACCTAAGGGAAAAATTAAGGTGAGTAAATCAGAATTAGAAAGGTTAAAACTTAAAAGGTTGCAGCTCTTTGTTCATGTTATCTCTACCATGAATGAAAGGCAGAAAAAATGACAGCTGCTATTTAAATTCTAGAGCATATATTAATCACCATCTACAGGAAGGGTTTTCTAAAGAACAAACTTATTATCTGTATATTGCATTACACAACAGGTGAATGAAACAGATGTGAGAAAGCAAGAAATACATCTCAATCTTTCAATCAACTCTGTGCTAAATAGGGTAATTTCTGGTGTAGTTGAATAACCAATATGTACCTCTCAAAAGCGGCTTCTTTCATTTCCTATTTCTATCCATCACCACTCTTCAAATATTGGAGAAACAAACATTAAAGAAGGCACTGAACTGACCAAGGAGCTCAAGACAGCAACAGGGGGCTGCGGGCGAAGACAATCTTTCGGAGCAACTGGGCGTCCCTGTACCTTACCAACAATCTGCTACTACATCACCAATAGAAATAGAGGGTAGGTTAATGAAGAAGAATGCAAGAAATCAGGCTTCCGTACAAAGCCTGATGGCAGAGGTTGGATGCGCATGTAGCTGCTGAGATGCAGATATCTGCCTTGCTTGGCTGAACTGTGTCGATCCCTTTGCGTCGCACCACCACCAGATCGTGTGCTGCGCCGCCGGATCAACCAACGCCGTCAACCATGAGCCCTAGGCCACCTAATCACAGGCATCCATCGATCCGGAAATGAAGATGGAGAGGGAGAGGGAGGGGCTGTGCCGGGCGTAGAGGGAGAAGAGTAGAGGGCGGCTCCAGGCTTCCCCCGCTTCAGGGCGGCCGGATCTGCCGGCGAGGAGGCCGGAGTCACCGGATCCGACAGTCCCGGCCTCCTCGTTGGCGGATGCGGCGGCGGGAGCGAAAGGATGGCGATGGCAGGACGACGGCACGGCGACAGCAGCGGCTCGCAGTAGGGAGTGCGCGGGGGAGGTCGCCAACTGCGGGAAGAAGAGGATGAGGGGGACGGCAAGCAGCGGCGGCGGCCGTCGCTTGGCAGGAGAGAGAGCGGAGAGAGAGGAGGAGAGGCAGAGGAAT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0208600.1 | 3 | 10242455 | A | T |
| Osa03LNT0208600.1 | 3 | 10242798 | A | C |
| Osa03LNT0208600.1 | 3 | 10242851 | A | G |
| Osa03LNT0208600.1 | 3 | 10244300 | A | C |
| Osa03LNT0208600.1 | 3 | 10244494 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0208600.1 | osa-miR5533 | Translation | 5.0 | 21.165 | 1 | 21 |
| Osa03LNT0208600.1 | osa-miR5836 | Cleavage | 4.0 | 20.971 | 1 | 21 |
| Osa03LNT0208600.1 | osa-miR156b-3p | Cleavage | 5.0 | 22.582 | 1 | 21 |
| Osa03LNT0208600.1 | osa-miR156b-3p | Translation | 5.0 | 19.306 | 1 | 21 |
| Osa03LNT0208600.1 | osa-miR397b | Cleavage | 4.0 | 13.384 | 1 | 21 |
| Osa03LNT0208600.1 | osa-miR1851 | Translation | 3.5 | 15.856 | 1 | 21 |
| Osa03LNT0208600.1 | osa-miR2096-5p | Cleavage | 5.0 | 23.07 | 1 | 21 |
| Osa03LNT0208600.1 | osa-miR2868 | Cleavage | 3.5 | 9.258 | 1 | 20 |
| Osa03LNT0208600.1 | osa-miR2868 | Cleavage | 5.0 | 12.958 | 1 | 20 |
| Osa03LNT0208600.1 | osa-miR5149 | Cleavage | 4.5 | 16.181 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0208600.1 | 3 | qLVG3 | Resistance or Tolerance | Cold tolerance | RM251 | RM282 |
| Osa03LNT0208600.1 | 3 | ccs3 | Physiological trait | Source activity | RM282 | RM251 |
| Osa03LNT0208600.1 | 3 | dcf3 | Physiological trait | Source activity | RM282 | RM251 |
| Osa03LNT0208600.1 | 3 | qGL3-1 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0208600.1 | 3 | qOE3-1 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0208600.1 | 3 | qTA3 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0208600.1 | 3 | qBM-3 | Physiological trait | Source activity | RG369 | RG745 |
| Osa03LNT0208600.1 | 3 | qGY-3 | Morphological trait | Seed | RG369 | RG745 |
| Osa03LNT0208600.1 | 3 | nan | Morphological trait | Seed | RM251 | RM554 |
| Osa03LNT0208600.1 | 3 | nan | Morphological trait | Seed | RM251 | RM554 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|---|---|---|---|---|---|---|
| Osa03LNT0208600.1 | osa-MIR1846e | 95.652 | 69 | 1 | 69 | 1.19e-25 | 111 |
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)