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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0209100.1

GAAAATTCGCATCTAACCAACTAACCAAGATCTTCAGAAGCAACGCATAACTGAATCCCAAAAATCCTAAGGACCTTCTTCAGACTGAGCACCACAATCGAACCAAAGACCATCGACATGCTAGAAATAACTGAATCCCAAAATTCCCAAGGACCTTCCTCAAACTAATCAGCATAATCGAACCAAAGACCATCGACATGATAAAAACAACACAGTAGCACTACTCCCACAGTTCACCGGAGCAAATCGACAGAGGCCGGCATCTCATTCTTTATACGGGTCCCTCTGAGCTCTCTGCATTTCCAAGTTATACAACGCCTCTTGCACCAGAGCCGATTGGGCAGCAGCATCCACGGTAGCAGGAGTTTGCTGCCACATCCTATCTCTGATCTCTTCTCGCAGGCCTCTTATGAATAATGCCACGTCGAAGCAGTTGCTGGAGACTGGATCGAACAGCTTGGCATGGTACAAGCGCTCCTCGAACTGGTCTCTGTACTCGCTCACTGTCATGATCCCCTCCTGCCTCAGATCCAAGAGTGCCGTGAGCTTCTGCTTGTGATCATAGGGCCCAAATCTCTCCTCCACGGCCTCACAGAACCGACCCCAATCACGCTCATGGCGCTTCTCATAGGTCATCATCCACAGCTCAGCCATCCCCTCCATGTGCATCGAAGCCCAGGAAACCCACATCTTCATTGGCATGCCGTAGAACTCGAAGTAGCGCGTGCACTTGGTGATCCACAGGCGCGGGAACGTCCCGCTGAAAGTGGGGAACTTCAGCTTCGCCAGACGAAAGAACCCTCCCGAGTAGCCGTCGATCCTGGCGGCGCGCGACGCCGCCGCCGCCGCCTGCTCCTTCTTCACGTCCTCCACCAGCGCCGCCGCAACGGCGATCTGCTTGGACAGCTCCTCGAGGCGATGTTGGTGCCCCTCGACCACCTGGCTGAGCAAGGGCAGCGCCTTCAGCTGCTCCGCGATGCGGTCCAGCTTCGCCTCCATCTTGCCGTCGGGGAGAACCGTAGGTTGCTCACCTTGGCCTTCGTTCGATCGTCTCGTCTCGTCGGCGTCGCCGGTTGCGCTGCAACCTGCTGCGGCGGAGCACGCGGAAGCGGTGGGCACTTCTCC

Coding Potentia
Explanation CPC Score
noncoding -1.05341
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0209100.1 3 10575479 T A
Osa03LNT0209100.1 3 10575515 G A
Osa03LNT0209100.1 3 10575610 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0209100.1 osa-miR1847.1 Translation 4.5 22.077 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0209100.1 3 qLVG3 Resistance or Tolerance Cold tolerance RM251 RM282
Osa03LNT0209100.1 3 ccs3 Physiological trait Source activity RM282 RM251
Osa03LNT0209100.1 3 dcf3 Physiological trait Source activity RM282 RM251
Osa03LNT0209100.1 3 qGL3-1 Physiological trait Eating quality nan nan
Osa03LNT0209100.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0209100.1 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0209100.1 3 qBM-3 Physiological trait Source activity RG369 RG745
Osa03LNT0209100.1 3 qGY-3 Morphological trait Seed RG369 RG745
Osa03LNT0209100.1 3 nan Morphological trait Seed RM251 RM554
Osa03LNT0209100.1 3 nan Morphological trait Seed RM251 RM554
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus