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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0209200.1

CCGGGATCCATGCGGCGGCGGCTGGAAGGGTGGGAGGACGAGTAGTGGCCGGCGAGGAAAAAGGGCAGAGCTTGCCGACCTGTAGACGCTAGGAGGGGTCTTCTCCTCAGCCGACGTTGTCCTCCTCACAGTCGGCGCCGTCCTGGTTGGCTTCCTCTCAGTGTCCGTAGCAACCGTCTTCGCCTCACCGGCCGCCATTCTTTCCTCCATGGCGCCGCCTGCTGCCACCTTCCTGGACTTCGAGACGATGGAAGGGGCCTTTCGTTGGCCGGCTCAAAGGAGCCCATCATCTCCTCGAGGTTTAGCGAGCTGATCCGGATGACGTCCTCGGTCCATCCCCATGAGGTGGTCGACGGTGAGCGGCATCTTCTTGGCCATGACGAGGTCGAAGAAGTTGGGATTGACGAGGTTGGGGGTGATGGGATCAAGTGGGACGGCTCCCATGTAGCCGTCCTAGCCGTTGCAGAAGGCGGTGATGTTGGATCAGTAGGTCATGTCAATGGGGCCATGTCGACCTCGATGAAGAAGCACTTGGCCTTGCCGATGGAGTGGCCGCCGGTGAGGACAACCATCTCAGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.881351
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0209200.1 osa-miR6250 Cleavage 5.0 23.68 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0209200.1 3 qBM-3 Physiological trait Source activity RG369 RG745
Osa03LNT0209200.1 3 qGY-3 Morphological trait Seed RG369 RG745
Osa03LNT0209200.1 3 nan Morphological trait Seed RM251 RM554
Osa03LNT0209200.1 3 nan Morphological trait Seed RM251 RM554
Osa03LNT0209200.1 3 qLVG3 Resistance or Tolerance Cold tolerance RM251 RM282
Osa03LNT0209200.1 3 ccs3 Physiological trait Source activity RM282 RM251
Osa03LNT0209200.1 3 dcf3 Physiological trait Source activity RM282 RM251
Osa03LNT0209200.1 3 qGL3-1 Physiological trait Eating quality nan nan
Osa03LNT0209200.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0209200.1 3 qTA3 Physiological trait Eating quality nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus