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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0210000.1

TAATAAAATAACAATATAATCTAGTATAAACCAATCGGCTAGCAATACAATATGATAGAATAAGCATTGATCCGAAGGTTAAGGCATACATCGGCTGGAGGTCCGATGTCATAAAATCCACAGTAAAGTCTTTGTTGCGATCGGCTAAATCCGACTTATATGTATATGCAATCCTTATAAGCCGATGCAACATCAAGATATCTTATCAGTTAGCACCCCGATAAAACATTAGCATGAACCTATCGGCTTAACAAGATTTATATTATCAAGGCCAGATCCGGCGGCTGGCGGTCGGAAGGCGGCTGGGGAAGGCGACGCCGGCCGGCGGTCGGGAGGCGGAGGAGGAAGTGGCCAGCTGTGGGGGTAGAGCCCGCGGTGGTCAGATCTGCGCCCCGTAGGCCAGATCCGGCAGCCGGCGGTCGGAAGGTGGCCAGGGGAGGCGGCGGCGGCCAGCGGCCGGGACGCGGAGGAGGAAGTGGCCGGCGGTGGGGGAGAGGCTGCGGTGGCCGGATCCGCGCCCTATAGGCCAGATCCGGCGGCCATCGGTCGGAAGGCGGCCGGGGGAGGCGGCGCGGGCCGGAGGTCGGGAGGCGGAGGAGGATGCGGCCGGCGGTGGCCTGATCCGCGCGTGGAGTCGGAGGCCTTCGCCGGACCCATTGCTCGGCGGCTCGGAGTGTGCAAGCTCGGTGCGTGCGGAGAAAAAGAAAAACGAGAGAGAGAGAGGGGGGATGGATAAGGAAGAAA

Coding Potentia
Explanation CPC Score
noncoding -1.01377
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0210000.1 osa-miR6254 Translation 5.0 16.133 1 21
Osa03LNT0210000.1 osa-miR529a Cleavage 5.0 5.334 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0210000.1 3 qLVG3 Resistance or Tolerance Cold tolerance RM251 RM282
Osa03LNT0210000.1 3 ccs3 Physiological trait Source activity RM282 RM251
Osa03LNT0210000.1 3 dcf3 Physiological trait Source activity RM282 RM251
Osa03LNT0210000.1 3 qLEI3 Resistance or Tolerance Submergency tolerance RM7249 RM3803
Osa03LNT0210000.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0210000.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0210000.1 3 qLEI3 Resistance or Tolerance Submergency tolerance nan nan
Osa03LNT0210000.1 3 qGL3-1 Physiological trait Eating quality nan nan
Osa03LNT0210000.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0210000.1 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0210000.1 3 qBM-3 Physiological trait Source activity RG369 RG745
Osa03LNT0210000.1 3 nan Physiological trait Eating quality RZ574 RZ284
Osa03LNT0210000.1 3 qGY-3 Morphological trait Seed RG369 RG745
Osa03LNT0210000.1 3 nan Morphological trait Seed RM251 RM554
Osa03LNT0210000.1 3 nan Morphological trait Seed RM251 RM554
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus