>Osa03LNT0211300.1

GGCGAGATCATTAGTACTAGTAGCAAGTTTAACAATTCAAAAGATGGCAGGTAAGCTATCGGCCACTCTATGACGTCCTTGTTGCTGTCGGTTACGTGAAATCAATGTGCAAAAATTTCTACTCCTCATCAAGAAAGTTGATAATGGTGCTCGTAAACAAGTTGCAGCGAGCGATGTTGGGATGAGGCAGCTTACACCAGGGGACGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCGCGACGGTGGTGCCGTCGCGGACGCCGCCGTGGTCCTTGTCGCCGTGGAGGGCGTCGAAGTTGAGGCGGATGTTGTTCAGCATGCGGATGCAGCGGAAGCTCTTGCCCACGTCGCCGCTCTCCGTCCACAGCACCGACTCGTCCGGGTACTCCGGGTTGAACGG

Explanation	CPC Score
noncoding (weak)	-0.634802

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0211300.1	3	qLVG3	Resistance or Tolerance	Cold tolerance	RM251	RM282
Osa03LNT0211300.1	3	ccs3	Physiological trait	Source activity	RM282	RM251
Osa03LNT0211300.1	3	dcf3	Physiological trait	Source activity	RM282	RM251
Osa03LNT0211300.1	3	qLEI3	Resistance or Tolerance	Submergency tolerance	RM7249	RM3803
Osa03LNT0211300.1	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0211300.1	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0211300.1	3	qLEI3	Resistance or Tolerance	Submergency tolerance	nan	nan
Osa03LNT0211300.1	3	qGL3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0211300.1	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0211300.1	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0211300.1	3	nan	Physiological trait	Eating quality	RZ574	RZ284
Osa03LNT0211300.1	3	qBM-3	Physiological trait	Source activity	RG369	RG745
Osa03LNT0211300.1	3	nan	Morphological trait	Seed	RM251	RM554
Osa03LNT0211300.1	3	qGY-3	Morphological trait	Seed	RG369	RG745
Osa03LNT0211300.1	3	nan	Morphological trait	Seed	RM251	RM554

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus