>Osa03LNT0211500.2

TGGTCATATAATGTACCAGTGCTCAACGATGTTTCATGCAATGCATGGGGAGATTACCAGGTCAATGTATATACTATTAGTCTACATCAATACAATAGGTCCATCAACAGTTTAACATTGCATTTTCCACACTAAATACGTACTTCAAGTCTTCAACAGCAAATACAACCGACACAACATGGCATCTGACACTATACCACCTACACAGAAAATCAAGAACAACATTACATCTACAGTTAATATGTCAAAGGGAACTAACCTACAGGGAAAATGAATACAGAATCAGCAAGTATTAACGACCAATGATGCTCTTCAAGTTCTCTGTTTCTGGATGACATAAGCCACTCCACGTACCACGTGGATCTTCAGAAGAATGTTTGCTTCGATTTGCGTCAGAACGATCAGCTTTCGAAGGCAGACAAGTGCTACTACTTATTCACACTAACTGGGGTGTGGCTCAGCAAAAATATGAGCCTTGACAGTTAAATGAGGAAGTTTGTTTTGCATTTCCTGCAGCCTACCAGGCAGCTTTCATATCTCAGTATGTTTTAGCTTCTCCCTTCGCTTTCTCGCAGCTCCAAGACATTCATGTGGATTAGCATAGAAGTAGTCCTCTTCCTTTGGCTGCCCGGCAATAGCTTTCCTTCTGGTGGGTTCGCTCATTCGGCCCTCGTGTAGCTCCTTCACAGCAGTAGAGAATTCGTCCCAGGACAGCTCCTGATCTTCAAGAAGATCTATAAGCTCAACTAGCTTTTTCCTATCAAGCTGTATGGTTTTGTGAAAGCCCATAAACCTGCGATGTCCTTCTACAACCTTAGCCATGTTTCCGTCATTACTGGGGATAAAAACATCACTAGCAATAGACACAAGATAGTCCAGGGCTGCCATTTGAGTCGAATGCTTCTGGAAGGGGCGTAACTCATCAGCAGATAAAAGCATCTCCTTCCGAATAATGTTAGGGAATTCTGTCTTCAGTTCAGTTAATCTTTTTTCACCACCATAGATTTCACCCGAGGCAATATATATCCGAGTGTCCCTGGGGAAACCAAGAGCTTTGAGTACTAATGTTGTTTCTCCGGGTGTTAGGGGGCATAATCCTTCGAGCCTTTTCTTTTCAGAATCTATTTCTTTTTCTTTCCACCAAGGGTACGCATACCTCATTCTCGTGAGCTCTGCTGTTTCTTCGTCAGAACATCCATGTGTACAACCAGAGAATGCAAGCATATCCATCTCGTATCTCAGATGAAGCACAATAAAAGATCCAGTTTTCCTAAGAGCTGATATCATCTTTTTGCCAAGAGCCTCAATTGATGGTGCAAATTGTAGTGCATTGTAGTTAACACGGCAACGAAGCTTTTGGAGCTTTAAAGGAAGGCCATTATTTGCAAGGCGAGAATCTGTCCTGCTAAAACGTACCACCTTATGCTTCCGTACTAGAGGCAAGATCTGTCTCAAATAGTACTTCTCGCTAGACCAGCTGATTGGCTGCATTGAGAATGGAACTTTCCTGCTGAATTTCTGTGGCAGTTCCCTGATGATCTTTACTTCATCTTGTAAAGAATTGATGAAGTGGTTTACATCAAAAATATCTCCAAAATCACTAGGATCAGCCCAGAAGGACTGCTTATCAAGTTCAGGTACCACCATAGTCAGGTTCATATAGCGTGCTACAGTTACCATGTCACATATCGCAGCTCGCATTTGGTTCAGACCACCATTGCATGAAATAAGAAGATAACCATTACTCTTATAAACCCTCCTGCGAGGCACAGCCGGGGGCGCGAGGCGCCCGACCTCGTCGGCGGCAGCGACGGTTACAGCAGAGGAGGCGCTGGAGTTGCTGCCGCCGCCGCCGCCTAGGCAGGAGGGCCGGGCGGCGAGGAGCGGCGGGCGGGGGAGGCCGAGGAGGCTGGATAAATGGAGGAGGGCCGTCCAGAGCACGATGCTCGAGGCGACGCGCACCGCCCACCGGAGCATGCCGACCCCGCGGCGGCGGATCGCCGGCGGCGAGCTCTTGTGCCTGGCCATGGCGCCTTCTTCCTACTGCTACTGGTATAAGCTACGCTTT

Explanation	CPC Score
noncoding	-1.11172

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0211500.2	3	12009917	T	C
Osa03LNT0211500.2	3	12010318	G	A
Osa03LNT0211500.2	3	12012225	G	C
Osa03LNT0211500.2	3	12010580	C	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0211500.2	osa-miR5816	Cleavage	4.0	17.076	1	24
Osa03LNT0211500.2	osa-miR5817	Cleavage	5.0	11.403	1	24
Osa03LNT0211500.2	osa-miR1427	Cleavage	4.5	17.47	1	21
Osa03LNT0211500.2	osa-miR1863b	Translation	5.0	17.621	1	24
Osa03LNT0211500.2	osa-miR5499	Translation	5.0	19.981	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0211500.2	3	nan	Physiological trait	Eating quality	RZ574	RZ284
Osa03LNT0211500.2	3	qBM-3	Physiological trait	Source activity	RG369	RG745
Osa03LNT0211500.2	3	qGY-3	Morphological trait	Seed	RG369	RG745
Osa03LNT0211500.2	3	nan	Morphological trait	Seed	RM251	RM554
Osa03LNT0211500.2	3	nan	Morphological trait	Seed	RM251	RM554
Osa03LNT0211500.2	3	qLVG3	Resistance or Tolerance	Cold tolerance	RM251	RM282
Osa03LNT0211500.2	3	ccs3	Physiological trait	Source activity	RM282	RM251
Osa03LNT0211500.2	3	dcf3	Physiological trait	Source activity	RM282	RM251
Osa03LNT0211500.2	3	qLEI3	Resistance or Tolerance	Submergency tolerance	RM7249	RM3803
Osa03LNT0211500.2	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0211500.2	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0211500.2	3	qLEI3	Resistance or Tolerance	Submergency tolerance	nan	nan
Osa03LNT0211500.2	3	qGL3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0211500.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0211500.2	3	qTA3	Physiological trait	Eating quality	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus