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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0212000.1

GACCACAAACTTTGAATTCTTTATAGCTGTATGAACAATTGAAGGAACAGCCAATATTCAAAACTGGCTAAATTGTAGATAAAACCATGAAAATTTTGTCAATCGTGTATACACAAGATACTTTTCTTCATGTCTTAATACTGTAATCCAAAATTTCAAAAAGTAGGGAAAGTGACCTATACTCAATGGAGAACTCAATGCTCCACTTTCAGAGTTAACACGTTTAGCTAAATGGGGCACTAAGCCACTAACTCAACATCTACTGAATTTAGTATGCACTGCTCTCATCATGCATACTAAAAATGTATGGAACCGAGTGACAAATCTGAAATCTGTCATGATAAGTAGGCTAGAGGCTGGGAACTAACCCAACAAGTCATTCAAGTATTTGATCTTTCTCCATGGCTCCATGCTACGCAGTAGCAATCGCTTTGTAGCCAGACTCATCAATGTAGTTGGCTAAAGCTCTGTCACCCGTCTTCACTATCTTGCCCTTTTCCATGATGTGAACATAGCTGGGCTTAATAAGATCCAAGAGACGTTGGTAGTGTGTAATCATCATTAGAGAGCTGTTTGGTGTCAAGATCCCATTCACTGCTTTAGCTACATATTCGAGTGCATCAACATCTAATCCCGAATCAATCTCGTCAAGAAGAGCTAAATCAGCCCCAAGGACAGAGAGTTGCAGAATCTCATTGCGCTTCCTTTCACCACCACTAAACCCTTCATTGACAGCACGGTTAAGGATCTCTGCATTCATATTCAAGGCATTAACCTTTTCCTCTATAATTGGATAAACCTGGAGAGGCTCTAATGCTGGTAAACCCTTCTTCTCTCTGCGAGCATTTAATGCCATGAGCAGAAAATCGTAATTGTTCACTCCAGGAATCTCAACAGGTGCTTGGAAACTCATAAAAAGGCCCGCAAGAGATCTTTCCTCTGGCTCCATATCAATCAAATTCTCACCCTTAAAGAGCACGGTACCACCAGTTACCTCATACTCTGGATGCCCAGCCAGAACCTTCATGAGAGTGCTCTTGCCGGAGCCATTTTGACCCATGAGCGCATGAATCTCGCCCTCCCGAATGGTGAGGTTGACGCCGCTGAGGATCTCCTGCCCGTTCTCCTTCACGCAGGCGACGAGATCGCGCGCCTCGAGAAGCGGCCTCCCGGCGGACTCGACAGCAGCGGAGGCCGCGGCGATCGAGCGGCGCCGCGGCCGGAGGGAGACGGAGCTCGGGGGCAGATGGCGGCGGGGGAGGGGGCGGGACGAAGAGGAGGAAAAGAGAGGGGAGGAGGAGGATACGGCCGCGGCGGCGGCGGCGGCGGCGGCCAAGGGCGGCGCCATGGGAGGAGGGAGGGTGAGGTGCGTGCGCCTCCAGATGCTTCTTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.714001
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0212000.1 3 12277076 G A
Osa03LNT0212000.1 3 12277489 C A
Osa03LNT0212000.1 3 12277127 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0212000.1 osa-miR2097-3p Cleavage 3.5 4.945 1 22
Osa03LNT0212000.1 osa-miR5145 Cleavage 3.5 20.597 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0212000.1 3 qLVG3 Resistance or Tolerance Cold tolerance RM251 RM282
Osa03LNT0212000.1 3 ccs3 Physiological trait Source activity RM282 RM251
Osa03LNT0212000.1 3 dcf3 Physiological trait Source activity RM282 RM251
Osa03LNT0212000.1 3 qLEI3 Resistance or Tolerance Submergency tolerance RM7249 RM3803
Osa03LNT0212000.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0212000.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0212000.1 3 qLEI3 Resistance or Tolerance Submergency tolerance nan nan
Osa03LNT0212000.1 3 qGL3-1 Physiological trait Eating quality nan nan
Osa03LNT0212000.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0212000.1 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0212000.1 3 nan Physiological trait Eating quality RZ574 RZ284
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus