© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0212400.1
ATTGGGTTGGGTCTTCTTTTCAAAAATACCCAAAATATCCTTAGTAGAGACATACAAGATTAACAATTGATTTTCATCAGAAGTTTCAAAAAAATACAGAAATTTTTATGTGGCTTGGCTGTGTTCGTTTGTGTGTTGGGAGCGTTTCCCTCCTTTTGAAATTATAAATTATAAAGTAGTGCTTAATTTACTCCAAAATTATCATTAACACCGCTATTTACTACAATGATCATCAGAGAGTCAAATATTATCGGTTTTGGCATCTAGTTTCTTCTCAGCTTCACTTATGCCCTCCAGTTCCCGCAACAAAGCAGTGTGCTTTCTCATATCCCCTTCCTGGACACTTTGAGGTGCCTTCTCGCGATAACCAGAAGCATCCATCATGTGTGTCACAGCATGGTGTAGCTTTTGGATTCCATCTCTCTTCTTCCTTAGCTTTTCACGCTCAGCCTCTGCATTTATGGCTCCTTGAAGCTTAAGGTACACCGACAAATCTTTGTTAACAACAGCGATTGCACAATCAGCTGGAGTTTCGTCATTCTCTGTCAGGATCTTAAGAAATGATACGGAAGAAAGACACACAATTAGAGATTGATGGCATTGAATAGTGGCAGTGACATCTTGGCTTCGGCAGAGTGCAAAAGCAGGACGTCTTTCTTTTCTTTCTGTTCGTGTCTTCAAAGACCTTATTTTGTTCACGGTGTCTAAGACAATGTCCATTTCATTTTCAAGATTGTCATTAGTCCATTCCTCAACGAGAGATGGATATTCCGAAATCATAATTGAATCTTGCCTACAAGAATATTTGGGTTGTGGAAGATGCTGCCATAGCTCTTCTGTTATGTAAGGCATGAATGGGTGGAGCAAGCGCAAACCAGTCTCCAGGCAAACCCATAGAGTATCTCTGGAGGCGACTCTTGCAGATTCAAACTCTTGAGGTTCGTTGAAGAAGTAAGGTTTTATAGCTTCTATAAATACATCACATAGCTGGTATTGCCACCAAGAGTATATAGCAGATGTTGCATCAGAGAATTTGTATGCTTCTAAAGAGGTAACAGTTTTGCCGGTAGCCTTGTTTAGTGCTGAGAGTATCCACTTGCAGATTGGTGGCATGATAGACACGTCGACAGTTGCAGGTGGACTGTAGTGAACACCAAGCTTGCCCATGGCAAAACGGATGGCATTCCACAATTTATTGCACCATTGTCGGTATCCAACCACTCTCTTGATATCAAGATTTATCCTGTCAGACTGAGAAGTGTAAGAAATCAGTGCAAAGCGGAGGGCATCAGTACCACATTCAGCAATTCCATCAGGATAATCTGTCAGCTTCCGTTCAAGGTTTAATTCATCTGGATCCAGATTACCTTCTTCCAGACGTTTTACAAGACCCTCGAGTGTCATGCCATTTATCACCTCAAGAGGATCAATGACATTACCAAGTGACTTGCACATTTTTCGGCCATGTGTGTCGCATACAATAGGATGCAAATAAACCTTCTGAAACGGCACATCACCACCAAGTTGTGTTCCCATCATCACCATCCGTGCTACCCAACAGAAGAGAATATCAAGTCCAGTTTCTAGAACTGAAGTAGGGTAGAAAGAACGGAGGTCAGCAGTATCATCTGGCCAACCAAGTACTGCTAAGGGGAAGAGAGCAGATGAAAACCATGTGTCTAGCACATCAGGATCCTGATTTAGGATGAATTTCTTTCCTGGATAACTTTTCTGTGCCTCAACGCTTGCAGCACTTTCACTTTTGGCGACTATCCAGCGGTCATTGTCAGAACCTAGAGTTTTCTCCTGGTCATCTTCTAGTGTCACATACCATGCAGGTACACGGTGTCCCCACCAATGTTGCCTTGAAACACACCAATCACGTATATTTTCAAGCCATCTATACCAGTCTTGTTCGTACTGCGGGGGAATGATCTCAATCCTCTTAGACCTTACAGCATCAAGGGCTACCTTGGCCATGGTGTTACAATTAACAAACCACTGCGGGGATTTTATCATAGGCTCCACTATGTCGTTAGTTCTTGAACAAATGCCCAAACTCGTTTCGGTATTCTTTGCACCCTTGTACAAGCCCTTTGCCTTCAGTGCTTCAATAATGCAAATTCGAGCAGTGAATCTTGGCATTCCTTCAAATTGTGCACCCCCATTGCTGTTTATTTTCCCATCATCTGTCAAGATATTAATGAACTGAAGGTTATTCCGTCTTCCAACCTCAAAGTCATTTGGGTCATGTGCAGGTGCAATCTTGACAGCCCCAGTACCGAAACTGGGATCAACTATCTCAGCATCACAGATTATTTTGAGTTTTCGGCCATTGAAGGGGTGGACTGCATACCGTCCATGCAGATGCATATACCTTTTATCCTCAGGATGAACAGCTATTGCTGTATCACCAAGCATTGTTTCAATTCGAGTTGTTGCAACAACAATCTCACCTAGCCCTTCTTCAAGAGGATAGGCAAAAGATATCAACACACCAAATTGTACAGGAGTAGCATAACCAGGGATCTTTAACATTGTTTCTTCTTTAAGATCAATATGATCAACCTCTATCTCAGAAATTGAAGTCAGAAGTGTGCAGTCCCAATTCACAAGGCGGTTATCTCTATATATCAGGCCTTCCTTGTGTAACCTTACAAAAGCTTCAGTTACAGCATTTGACCTTTGCTCATCCATTGTAAAAGCCTCACGAGACCAATCAAGTGAGGCCCCAAGGCGGTGCAATTGATTCAATATAGTACCACCATACCGCTCTTTCCATTTGAGAACTTCACAAACAAAATTGTCAGGCCCTATGTCATGCCTTGTCAGATTCCTTTCACGCATAAGCTTTTTTTCTACTACAACCTGTGTAGCAATGCCAGCATGGTCCACTCCAGGGACCCATAGAGCATTATAACCTGACATCCTCCGCCATCGTATCATCGCATCCTCTATAGCCACTGTAAGAGCATGGCCTATGTGAAGAGCTCCAGTCACATTTGGAGGTGGCATAACTATAACAAATGGTGGCTTTGTGCTTGCAGAATCTGCCCTAAAATATCCTGATGATTCCCACCAGGCATACCATGATTTCTCAACCGTGCTTGGGCAATACTGATTGGCCATTTGAGGTGCAAGCAGTTTCTTCTGCCCATTAGGAGTGTCTTGATCAATAAAATCTTCAGGATTTTCATCCTCCACAGCTTTTCCCCTATGTTTCTTCTCAACCTTCTTGAGTACATCTAAAGCTGGCTGTGCCTGAAGCATAGCTGCCTCCTTTTGTTTTGCTTTAAGTCTTTTCTCTTCTTTCTCTTTAGCCTTCTGATTTTTCCTCAGTTTCCGTTCTAACGTTTTCTCATCAAGTTGCTTCTCCGGAGCCTTCTCCGGACCATGCACCTCGGGCTGCTTTTCCATGCTTAAGGGCCTGTTTGTTTGGGCTAAAGCTTCTCCAAAAGCCGCTTCTTGCTTTTGGTATGTAAGTCTGTAAAAGTTGTGTCTGTTTCGCAGCCCTGCTTTGCGCCAATTGATGTGTGCAATGTCTGTAATGCCCCTGGCTGTTTGGAGTGAACCTATTTGTTTATTCGATAAGTGGATCTGGTACAGGGACACCCAATGTATGTCGCGGTACTCTGGCTGTGTGCTCGGAGCCGGAGGGGGGCCTCGGATTCGTCCGCCTGGGGAGAGGAGCTCCGGGGTCGCCTGCCGCGGAGAGAGACTCGGCGAGTTGGCTGTTCGCTCCGCCAACGGCCACCGCGGCCGTCGACTAGAGACGACGGCGAGAGCGGCCAGACAAAGGGCCGCGAGTTAGGGTTCTTTTGTTTTTTTTCTCTC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0212400.1 | 3 | 12422321 | C | T |
| Osa03LNT0212400.1 | 3 | 12422396 | A | G |
| Osa03LNT0212400.1 | 3 | 12422932 | A | C |
| Osa03LNT0212400.1 | 3 | 12423322 | A | G |
| Osa03LNT0212400.1 | 3 | 12425498 | C | T |
| Osa03LNT0212400.1 | 3 | 12423750 | G | A |
| Osa03LNT0212400.1 | 3 | 12425696 | G | A |
| Osa03LNT0212400.1 | 3 | 12427189 | C | G |
| Osa03LNT0212400.1 | 3 | 12428675 | A | G |
| Osa03LNT0212400.1 | 3 | 12429334 | C | T |
| Osa03LNT0212400.1 | 3 | 12430323 | T | C |
| Osa03LNT0212400.1 | 3 | 12430546 | A | G |
| Osa03LNT0212400.1 | 3 | 12430860 | A | C |
| Osa03LNT0212400.1 | 3 | 12431168 | T | C |
| Osa03LNT0212400.1 | 3 | 12431424 | A | T |
| Osa03LNT0212400.1 | 3 | 12432045 | G | A |
| Osa03LNT0212400.1 | 3 | 12421449 | A | G |
| Osa03LNT0212400.1 | 3 | 12422063 | A | G |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa03LNT0212400.1 | DTM_#DNAt_MULE_japo_Os0360 | Chr3 | - | 12421345 | 12422204 | 758 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0212400.1 | osa-miR5525 | Cleavage | 5.0 | 17.616 | 1 | 22 |
| Osa03LNT0212400.1 | osa-miR2873c | Translation | 3.0 | 16.067 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR6247 | Translation | 4.5 | 10.519 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR1861o | Cleavage | 3.0 | 16.652 | 1 | 22 |
| Osa03LNT0212400.1 | osa-miR395b | Cleavage | 4.0 | 14.834 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395d | Cleavage | 4.0 | 14.834 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395e | Cleavage | 4.0 | 14.834 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395g | Cleavage | 4.0 | 14.834 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395h | Cleavage | 4.0 | 14.834 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395i | Cleavage | 4.0 | 14.834 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395j | Cleavage | 4.0 | 14.834 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395k | Cleavage | 4.0 | 14.834 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395l | Cleavage | 4.0 | 14.834 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395s | Cleavage | 4.0 | 14.834 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395c | Cleavage | 3.5 | 14.834 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395c | Cleavage | 5.0 | 12.629 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395u | Cleavage | 3.5 | 14.834 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395u | Cleavage | 5.0 | 16.637 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395u | Translation | 5.0 | 12.608 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR168a-5p | Cleavage | 4.5 | 17.669 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR171f-5p | Translation | 4.0 | 18.798 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR166g-5p | Cleavage | 5.0 | 5.725 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR530-5p | Cleavage | 4.5 | 20.104 | 1 | 20 |
| Osa03LNT0212400.1 | osa-miR395m | Cleavage | 4.0 | 14.834 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395n | Cleavage | 4.0 | 14.834 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395o | Cleavage | 4.5 | 14.834 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395o | Cleavage | 5.0 | 12.208 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395p | Cleavage | 4.0 | 14.834 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395q | Cleavage | 4.0 | 14.834 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395r | Cleavage | 4.0 | 14.834 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR529b | Cleavage | 5.0 | 20.836 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR1850.3 | Translation | 4.5 | 17.827 | 1 | 22 |
| Osa03LNT0212400.1 | osa-miR1861a | Cleavage | 3.0 | 16.652 | 1 | 22 |
| Osa03LNT0212400.1 | osa-miR1861b | Cleavage | 4.5 | 16.652 | 1 | 22 |
| Osa03LNT0212400.1 | osa-miR1861d | Cleavage | 4.0 | 16.652 | 1 | 22 |
| Osa03LNT0212400.1 | osa-miR1861f | Cleavage | 4.5 | 16.652 | 1 | 22 |
| Osa03LNT0212400.1 | osa-miR1861i | Cleavage | 4.5 | 16.652 | 1 | 22 |
| Osa03LNT0212400.1 | osa-miR1861l | Cleavage | 4.5 | 16.652 | 1 | 22 |
| Osa03LNT0212400.1 | osa-miR1870-3p | Translation | 4.0 | 19.426 | 1 | 24 |
| Osa03LNT0212400.1 | osa-miR2096-3p | Cleavage | 4.0 | 5.599 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395x | Cleavage | 4.5 | 12.629 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395x | Cleavage | 5.0 | 14.834 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR395y | Cleavage | 4.0 | 14.834 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR5338 | Cleavage | 2.5 | 21.111 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR5494 | Translation | 5.0 | 13.455 | 1 | 21 |
| Osa03LNT0212400.1 | osa-miR2275c | Translation | 3.5 | 10.56 | 1 | 23 |
| Osa03LNT0212400.1 | osa-miR2275c | Cleavage | 5.0 | 15.73 | 1 | 23 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0212400.1 | 3 | qLVG3 | Resistance or Tolerance | Cold tolerance | RM251 | RM282 |
| Osa03LNT0212400.1 | 3 | ccs3 | Physiological trait | Source activity | RM282 | RM251 |
| Osa03LNT0212400.1 | 3 | dcf3 | Physiological trait | Source activity | RM282 | RM251 |
| Osa03LNT0212400.1 | 3 | qLEI3 | Resistance or Tolerance | Submergency tolerance | RM7249 | RM3803 |
| Osa03LNT0212400.1 | 3 | nan | Resistance or Tolerance | Other stress resistance | RM4512 | RM8208 |
| Osa03LNT0212400.1 | 3 | nan | Resistance or Tolerance | Other stress resistance | RM4512 | RM8208 |
| Osa03LNT0212400.1 | 3 | qLEI3 | Resistance or Tolerance | Submergency tolerance | nan | nan |
| Osa03LNT0212400.1 | 3 | qGL3-1 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0212400.1 | 3 | qOE3-1 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0212400.1 | 3 | qTA3 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0212400.1 | 3 | nan | Physiological trait | Eating quality | RZ574 | RZ284 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)