>Osa03LNT0212600.2

CCTGAATATCGTCAGATAATTAACGATGTTTCTACCTTCGGTTTTCCTTTAACAACTGATCAGAGTATTGCTCTGCAAAGATTTTGCAGTGGCCGGGATACAACATAACATTGGCTTAGGCAAAACGGTAAGCAAAAACATTCAATTGAACCAAATCTGAAGGTTGTAGTAGTCCGATCAACCAATAGCTCAGTCTCAATGGCTCACTGGCCATGATCAAAACAAGGCTCTGCCCGACAGTCAGGCTGCTCCTGCTCCTGTATGAAGAAATATCCGAGATAGAATCATGGGGTTCTCTTCAGCTAAGAATTTTATTTAGCCCATCATTCACTGTGCGATGGGCTTGGCAACAAATTAGTCGCTGCTGGCACTCTTTCTGGCCATTTTTACTCGGTCGTAGTCCGCTTTCCACACCCTATAAGCGCTCCTAACTTCCTCCAGCTGTGGATCTGGTATGCTCGTGAATCGGTCCAAGTTCTCCACCCATTCTTTCCATGGAGGCATGGATGCATCCAGGAAGTTTGCTAGCTCTGGAACAAGAGCTGCCCTGTAGAATTCCATTACCCCCTTCTTGACTTCTTCAGATTCATTCATTGATTGGATCCCAGGGCGAACTATAGTCCCTTGCTTGTTCCTCAGGCAGAAACTGTTATCTCTAAGCACCAAAACTTCAGAAGGGGCAATTGGTAACACAATGCGAGAAAACTTTGCAAGAGACAGTGCTATAATATCTTTGGGTAGTAATCCACGCTTAACCGCCACCGAAGTACCAACCATCTTCCGGATCTGATGCAGCATGAAAGATACTCCTGATATAGTCAATTCCACAAATTGAATTCCTGATGAAATCTGGAGCTCTCCACAGGAGAATGTGAGGATATCTCTGAAATGTGAAGCATTCAGTCGATCATTTTCATCAGGCTCATGAAGCCACCTAGCTCGAATCTGAACCTGCTTCTCAGAAAATTCGGGATTATCCTTATAACTGTCTTCTGGTACACTAGAACCAATTATCGACGAAGAGTTCAAGTCTTCTTCATCATGGTCTGAAGTAGTTCCGTCATCAGAGGAGCTTTGGTCCAAACTCATTTCAGTGGGCATGGAATTTACAGCTGAGCTTGCCCCTTTTACCTTACGATGCCTTCCTGCTAGAACTTTCCTATACTTGGCACGAGCAGTGTAATTATGAAATGGATGGTTTCCCTACATGTATAACCAATTTAATGAAACTGTGCACATGCAGAATAAACTGTAAAATGAGAGATAAAAATACTCTGACAATGTCTATAATTACTGTATTGAGTAAAAAGGAAATGCATAACAAACAATTCAGATGGTTCAGCAAAACAACTCACCTGGGCTATGTACCAATCAGATGTTTCTTGGGGAAAAAGCCCAGATGTCAAAAGGTGAAATTATTACCAGGATCAAACTGGGCTGGCCTTTTTGCAAATTCACAATTCACATTGGGTCCAATACTCCAGCAACTGTTATGCAAGAGTGTAATGAACCAGGAGTCCTTCATCTATTTAGTTATACCACCCCTACATGGTTCCTAAACTTAAATTTAGTCTAGTATTTAGATGAACTTGTTAAACTCTTCACTGAAGTACATCCATCATCAAATAATTGGAAATCGACAAGGTAGGACACAGTGATGCTACTGGGCCTGCTTGACCTTCCCTCTTGGATTCCAAGCATGCTAAAATGTGCCAAATAAGTTTTTCCACTTCATTTTTTCCATCTCACGAATTGCAGCTGGATCTAAGCAAATCCAGGAACACGCAAGAGTAAAATTCAAAGTCAAGGTCCACAATGGATTGACAGGATATATTTATAACCTCTGGTGTATTTACTGGTCATACAAACTCATGTTTTATTCTTATTTAACTATGTGGCAGTATCTGGGTGTCTCCATAAACACATCTGCTATCAAACAATTTATCAAAGAGATCATATGTCATGTTCTTTTGCACAGTCTAAGCACAGAATGCAGGCGATATACTTGATCATACACATACCTCAAAACCTTTCAGAATGCTATTGAATTCTGACAGGTGTTCCATTACTTCTTCAGAGCTACAACCACCTTTAATTCCAATTATTTCAGCAGGAAGAAGATACAAGTATTCCCGATACAAGCATTCCCTCCTCACATCGAAACTCCTTTGAGCAGGCAAAACACTGAAAACTCTAACATTGTCTGGCAAATTTGAGTTAATGAAGTTTGAAAGAGCAATGCCATCAGGATCATTCTCCCATGCTCGATCAGGGATTTCCATTTTCAGAGAGATCATTGTGGCCAGTGAATGTACCTGAAATTAGTTCGTTCCCTTTATCAGTTCTACTACTCCTTTCCCAGCCAACTTTTTGCAGCTTCCCATAATTACTCTCAAGAATGCCCCCAGCCTTGAAGATGGCTGTTTCCAAGACTGACTCAATTGTCGAGTCCGCGCTGAGCTCCCGCTGCTTCTGAAGACCTCGGTACTCCGTGCCGACGTAGCCTACGCGGAGCACGACCCTCTTCTTCCGCGCGGACTCCCACCTCATCCCGCCGCCCCAATCGTCGGAGCAGGTGGTGGCAAGCGGAGGCGAGGGTGGCGCCGCAGAAGCCGCGGCGCCGCCGGGGTAGGAGACGCACGGCGTAGTACGGAGGAACCTCGGGTTCACCCGGCGAGAGAGGAGAGCGGAGGAGTAGGGCCTCCAGAGGCGCCACGTCGCCGCGGCGGCGGCGGCCATCGGCGGCGCGGGCGGTAGTTCAAGCAGAATGGAAGAGAGACGAT

Explanation	CPC Score
noncoding	-1.01607

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0212600.2	3	12592075	A	G
Osa03LNT0212600.2	3	12592477	G	A
Osa03LNT0212600.2	3	12593745	G	A
Osa03LNT0212600.2	3	12594763	T	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0212600.2	osa-miR5816	Cleavage	4.5	12.325	1	24
Osa03LNT0212600.2	osa-miR6248	Cleavage	3.0	10.053	1	21
Osa03LNT0212600.2	osa-miR171f-5p	Translation	5.0	17.032	1	21
Osa03LNT0212600.2	osa-miR2864.2	Translation	5.0	11.854	1	21
Osa03LNT0212600.2	osa-miR2864.2	Cleavage	5.0	13.096	1	21
Osa03LNT0212600.2	osa-miR3982-5p	Cleavage	4.5	22.089	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0212600.2	3	nan	Physiological trait	Eating quality	RZ574	RZ284
Osa03LNT0212600.2	3	ccf3b	Physiological trait	Source activity	RM16	RM282
Osa03LNT0212600.2	3	ccfs3	Physiological trait	Source activity	RM16	RM282
Osa03LNT0212600.2	3	qLEI3	Resistance or Tolerance	Submergency tolerance	RM7249	RM3803
Osa03LNT0212600.2	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0212600.2	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0212600.2	3	qLEI3	Resistance or Tolerance	Submergency tolerance	nan	nan
Osa03LNT0212600.2	3	qGL3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0212600.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0212600.2	3	qTA3	Physiological trait	Eating quality	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus