© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0212800.1
CGTTAATGAAAGGTTTCAAGTGGTTAAGTTTCTCGACGAAAAATGACCATTCAGTTAAGATAAACCATACACACTCTAACCAGCTACTCTCATTTGCTTTTGCCTGCACACAATATCTTTGGGTACAAACCGGAGAAGCAAAGGTTATACTATGAGGCATACATCAGGAAGCAAGTTGCTCCAGCCAACCGAAATTGCAACCATCTTTTTAGCCATGGACAACAGGGCGAGCTCAACAAAAATCTTTCCAGCCAGCAACCGAGGATTTTCCGATTGCTGTAGCTCACCTGACCTGGGCCAGTGCAGCACCCATCAACACATGCCTCTTCTTGGCTTTTGCTGCAACTTTTGAGCACCAACAAATGTATTGTCAATTAGCTAAGCAGCAACCACCACCATCAAAAGCTTGATATTTTCAGCTGACTTGCATATCATTAAATCCCCCAAATCATTCTGCCCCCGCCACTAATCAAGGTGGCGAGTGGCTGTAACACACAGATGGATCCGGGATTCGAAGGAATTAGTAGCTTGTAATTTCAGCAAGCTGTAAAATTCTAGATACTTCTAGAGTGTTCCTCGTCGCTAGCAGAATGAAATGCTGAAACAAATGGTGTACCGTAATACTCCCTCCGTCCCAAAATAAGTACAGTTTTGCACTATTCACGTTCAACGTTTGACCGTTCGTCTTATTTATTTTTTTTTATAATTAGTATTTTTATTGCTATTAGATGATAAAACATGAATAGTACTTTATGTGTGACTAAATATTTTCAAATTTTTCACAAATTTTTTAAATAAGACGGACGGTCAAACGTTGAGCACAAATATCTACGACTGCACTTATTTTAGGACGGAGGTAGTACATCAGACTGCTTGAATCGCCCATTGTTTGGCATTCAGTATTTGTTTGGCATTTCGATGAAGCTTCAACCTTGCCAAGCCCATACAATATCCTTTAGTGCTGGTCTCATCTCTTGTTTGACCTTTTGATACTCAAGTGTATCACCATTTATCTTCGTAAATTCCACTAAATGAAAATCTGGTGTGATCTGAAATATTTCAGCATTGATGGACATTACACCTTTCCTTCCAGGTTTTGATCCTTCCATCTTTAACAAACCACCATTTTTCTTCAAGAATTTTAATCGTAAATTCTTCGCAACATCCTCAAGCTTTTTGGTGATTGTCGTAGCTGTGTTAGTGGATGTAAATTTTGATTCCTCTTTGCTGTTTTCATCTTCAAACATAGCAGAAAGATCAAATCCTGATGAAAGAGAAATAATATCAAAAGCATTCAAGCTAGTAAGATTTTCTGCTTCTTGTTTTCCTTCATTTATATTGTTGCTTAAATTACCAAATGTTGAATCCATGTCAACATGCACAACTTTATCAACTTTATCTGTTGGTATGGTCTTGTTAAGTAGATCTGAATTAAGACCTACTCTAAACCAAGGATCTTCCATAATTTCTGAAACTGAGATCCGTGTCGCAGGGTTTGGATCAAGAATACGTCGCAAAAGCTTTCGGATATCAGAAGAAAACCAACTTGGCCATTTGAATTCCGCTTTGCATATCTTCTTATACATGTTTATCACATTTTTATCTTGAAATGGGAGATAACCAGCCAATAGTACATAAAGAATCACTCCACAAGCCCATACGTCAGCCTTTGCACCATCATATCCTTTTCTGTTAATCACTTCTGGAGCAACATATGCAGGAGTTCCACAAGTTGTGTGGAGCAACCCATCTTGTCTCTTACATTCTGCAAGTGCACTCAAACCAAAGTCTGAGATTTTCAAATTTCGATTTTCATCAAGAAGAAGGTTTTCTGGCTTTAGATCACGATGATAAACCCCTCTGCTATGACAAAAGTCAATAGCACTAATTAACTGCTGAAAGTACTTCCGTGCAACTTCTTCCTTTAGTCTTCCACGTCGAACCTTGTTGAATAACTCTCCCCCTTTCACATACTCTAGGATAAAATATATCTTAGTTTTGGTAGCCATCACCTCATACAATTGAACAATGCACGGATGTCTTACTAGGTTCATCACTGAAATCTCTCTTCTTATTTGATCCATAAGCTCACATTTCAATATCTTTTCTTTGTCAATCACCTTGATTGCAACACTTTGTGAATTCTTAATATTACGGCCATGGTAAACTTTAGCGAAACTTCCTTGCCCAAGTAATTTTCCTATCTCATATCTCTTCATCAAAATATTCCCCTTTTGTTCTACCATCTTATCAAATGCCTTATGTATTCAGAAAGCACTAATCATGTAACTTAGTGATGATGATTGATGAGGGAGTATCAGATGAGAGAGGCAATAAATGAAAAATAATTTCAACCGTCCCCAACAAGATGGTAATCTAACATGATGGTTGAACTGCCACATCTAGCCCCATCGTGCAAATGCACAAGGAGCACTTGCTGTGCATAAACCCGTACTTCACTATCATCAAGAGCACACAAAGCATAAATATTTTGAGCTACCTTTCCAATTCCCACACAAGGTAGCTCTCTATCATAGAAGCACATCTTCCAGCATTCCTTTTGTTTTGTGCTTCTAGCAAAAAGCCTAATACTGATCCCGGCTCTGATCCGGGAAGGTTAAAGAGATCGGAATTAACCCTGCCGATCGAGCAGTCCCCCCTAAAATCAAGCCCTCCAACTCAAAGAAGATGAAAAAGAAAAATATCCAGAGAAGAATGGGGGCAGCCGAGGAGTAGGAGTGAGACGGAGGAAACGAATCAGGAGCCACCAAAAACGAT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0212800.1 | 3 | 12630824 | C | T |
| Osa03LNT0212800.1 | 3 | 12633115 | A | G |
| Osa03LNT0212800.1 | 3 | 12634190 | G | T |
| Osa03LNT0212800.1 | 3 | 12634222 | T | A |
| Osa03LNT0212800.1 | 3 | 12635022 | A | T |
| Osa03LNT0212800.1 | 3 | 12631554 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0212800.1 | osa-miR812p | Translation | 4.5 | 10.755 | 1 | 24 |
| Osa03LNT0212800.1 | osa-miR5797 | Cleavage | 4.5 | 14.375 | 1 | 21 |
| Osa03LNT0212800.1 | osa-miR812s | Translation | 2.5 | 11.013 | 1 | 24 |
| Osa03LNT0212800.1 | osa-miR5799 | Translation | 2.5 | 11.013 | 1 | 24 |
| Osa03LNT0212800.1 | osa-miR5835 | Translation | 4.5 | 16.508 | 1 | 24 |
| Osa03LNT0212800.1 | osa-miR6248 | Cleavage | 4.0 | 15.154 | 1 | 21 |
| Osa03LNT0212800.1 | osa-miR6248 | Cleavage | 4.5 | 10.005 | 1 | 21 |
| Osa03LNT0212800.1 | osa-miR167h-3p | Cleavage | 4.5 | 18.01 | 1 | 21 |
| Osa03LNT0212800.1 | osa-miR812a | Cleavage | 1.0 | 10.755 | 1 | 22 |
| Osa03LNT0212800.1 | osa-miR812b | Cleavage | 1.0 | 10.755 | 1 | 22 |
| Osa03LNT0212800.1 | osa-miR812c | Cleavage | 1.0 | 10.755 | 1 | 22 |
| Osa03LNT0212800.1 | osa-miR812d | Cleavage | 1.0 | 10.755 | 1 | 22 |
| Osa03LNT0212800.1 | osa-miR812e | Cleavage | 1.0 | 10.755 | 1 | 22 |
| Osa03LNT0212800.1 | osa-miR1436 | Cleavage | 4.0 | 10.026 | 1 | 21 |
| Osa03LNT0212800.1 | osa-miR1439 | Cleavage | 2.5 | 9.956 | 1 | 21 |
| Osa03LNT0212800.1 | osa-miR812g | Translation | 4.5 | 11.013 | 1 | 24 |
| Osa03LNT0212800.1 | osa-miR812h | Translation | 4.5 | 11.013 | 1 | 24 |
| Osa03LNT0212800.1 | osa-miR812i | Translation | 4.5 | 11.013 | 1 | 24 |
| Osa03LNT0212800.1 | osa-miR812j | Translation | 4.5 | 11.013 | 1 | 24 |
| Osa03LNT0212800.1 | osa-miR2097-5p | Cleavage | 4.5 | 15.014 | 1 | 22 |
| Osa03LNT0212800.1 | osa-miR2097-5p | Translation | 5.0 | 12.139 | 1 | 22 |
| Osa03LNT0212800.1 | osa-miR2874 | Cleavage | 4.0 | 10.35 | 1 | 24 |
| Osa03LNT0212800.1 | osa-miR812k | Cleavage | 3.0 | 10.77 | 1 | 24 |
| Osa03LNT0212800.1 | osa-miR812k | Translation | 4.5 | 17.343 | 1 | 24 |
| Osa03LNT0212800.1 | osa-miR812l | Cleavage | 3.0 | 10.77 | 1 | 24 |
| Osa03LNT0212800.1 | osa-miR812l | Translation | 4.5 | 17.343 | 1 | 24 |
| Osa03LNT0212800.1 | osa-miR812m | Cleavage | 3.0 | 10.77 | 1 | 24 |
| Osa03LNT0212800.1 | osa-miR812m | Translation | 4.5 | 17.343 | 1 | 24 |
| Osa03LNT0212800.1 | osa-miR812o-5p | Cleavage | 2.0 | 11.895 | 1 | 21 |
| Osa03LNT0212800.1 | osa-miR812o-3p | Cleavage | 2.0 | 10.944 | 1 | 24 |
| Osa03LNT0212800.1 | osa-miR5157a-3p | Cleavage | 5.0 | 12.07 | 1 | 24 |
| Osa03LNT0212800.1 | osa-miR5157b-3p | Cleavage | 5.0 | 12.07 | 1 | 24 |
| Osa03LNT0212800.1 | osa-miR5490 | Cleavage | 5.0 | 11.482 | 1 | 21 |
| Osa03LNT0212800.1 | osa-miR5500 | Cleavage | 4.5 | 21.467 | 1 | 22 |
| Osa03LNT0212800.1 | osa-miR2275c | Cleavage | 4.5 | 12.754 | 1 | 23 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0212800.1 | 3 | nan | Physiological trait | Eating quality | RZ574 | RZ284 |
| Osa03LNT0212800.1 | 3 | ccf3b | Physiological trait | Source activity | RM16 | RM282 |
| Osa03LNT0212800.1 | 3 | ccfs3 | Physiological trait | Source activity | RM16 | RM282 |
| Osa03LNT0212800.1 | 3 | qLEI3 | Resistance or Tolerance | Submergency tolerance | RM7249 | RM3803 |
| Osa03LNT0212800.1 | 3 | nan | Resistance or Tolerance | Other stress resistance | RM4512 | RM8208 |
| Osa03LNT0212800.1 | 3 | nan | Resistance or Tolerance | Other stress resistance | RM4512 | RM8208 |
| Osa03LNT0212800.1 | 3 | qLEI3 | Resistance or Tolerance | Submergency tolerance | nan | nan |
| Osa03LNT0212800.1 | 3 | qGL3-1 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0212800.1 | 3 | qOE3-1 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0212800.1 | 3 | qTA3 | Physiological trait | Eating quality | nan | nan |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|---|---|---|---|---|---|---|
| Osa03LNT0212800.1 | osa-MIR812q | 89.712 | 243 | 1 | 242 | 6.36e-84 | 307 |
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)