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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0213000.2

CTGCAAATTTCTCCAGGTAGGGCCATACATCAAATCTTGATATCCATTTCCTGAGTATCCCATTTTCATTTCTGAATGGCACTCGTAATATGTAAGTATGTTGTGTCCCACTTATTCTCTCAAGACGCTGATTGCATGATGTCCCTTTTGCTTCTGGTATCAGCCGAGTAACCTCAACGACATAAAAAAATGCTTAGATGATCTTCTTTTTCACGTGAAAGAATCACAACGATAAATCAAGTTCACCATGTGCAGGAGCATGCAAAAAATAGTAATGTTCCATAAAACAAGGTAACTGGAGCATGTACCGAACTACTGATAGAATAGAACATCACACTTAACAGATGCCACATTTGAGGAAGGAAATAGACATGCACTTACAATAAGAATTTTAGGGGTAAAATCAAGGCCTTGTTTCTTTAACCTAAGAACCATCTCATTCTCCAATGCACGGACTTGGTCCAGTATATAGACAATCTGCCCTCCAGTATCTGGTAAGCCCAACACATTGGCTTGGCCAAAATATCCATGAGGAGACACTACGACGACATTAAAGATCATGGGGATCCTTCCCAAGAACGTCTCAAGAGTAGATGGATCAGGCGCTTGAAGCACATCCAGAAGGAGATGTATCATCTCCAAGACATATCCAGCTGTGTCGCCCCAACCCTTCTCCAATCCCCATTCTTGAAACCTGAATGTTATAGTATGGTGTGTCAGCTGGGAGTTTCGACAAGTGCTCCTCAGCTTTTGTCAGCACAGACTGAAGTCTTCCCAGACTCTGTATCCTGTCATTTAGCATCATG

Coding Potentia
Explanation CPC Score
noncoding -1.12137
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0213000.2 3 12677957 A T
Osa03LNT0213000.2 3 12678532 C A
Osa03LNT0213000.2 3 12678895 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0213000.2 osa-miR5816 Cleavage 4.5 24.958 1 24
Osa03LNT0213000.2 osa-miR7692-3p Cleavage 5.0 15.031 1 24
Osa03LNT0213000.2 osa-miR816 Translation 4.5 21.552 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0213000.2 3 nan Physiological trait Eating quality RZ574 RZ284
Osa03LNT0213000.2 3 ccf3b Physiological trait Source activity RM16 RM282
Osa03LNT0213000.2 3 ccfs3 Physiological trait Source activity RM16 RM282
Osa03LNT0213000.2 3 qLEI3 Resistance or Tolerance Submergency tolerance RM7249 RM3803
Osa03LNT0213000.2 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0213000.2 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0213000.2 3 qLEI3 Resistance or Tolerance Submergency tolerance nan nan
Osa03LNT0213000.2 3 qGL3-1 Physiological trait Eating quality nan nan
Osa03LNT0213000.2 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0213000.2 3 qTA3 Physiological trait Eating quality nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus