© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0213400.1
CGAGCACGAAAATACAATGATGGCATGAATACCTGGATATAGGCATCCCCTTCATTCTAAAATAAACAAATTTTGTGTATGGAGGGAGTAGAGCCTCGTCAGATTGCAACTGTTATTATTATAAGCCGAAGCTGTAGGTGCACTGGGTGATGGGTCAACACCAGAGAATCAAGCATAAAGAAACTGAACATGTGGATGATCGAGAATTACAGCAGCCACAGTATCCCAGAAGTCCATAACATCAGGATATAACGACCAATGTTATCTCTCGGACACCATCCTGTTCGTGCTGATAATGTTTGGACCTCAGTTGATACCGCGTCAAGGTTTACTAACAAATGTGTAAACTACCAAACTATATACCAGCAATGTCTACCAAAATCTGACGTGGAAATGATGCGAGGAATATCAATTGCTCCAGAAAATGCATAACCTTGCTAGCTCTGATTCAGACATCATGCAGAGTACCTTGATGGTTCCTGCTTTAATCTAGCTTATCAGTAAATAAGAACTTCGCTGAGCTTTTACCACCTATAATGAACAGCGGAGGGGTATTCTTGTTGGATGACAGCTGCTTTCACATCCCACAACTTAACCGCCTAATCTAATTTAAAATTTCAATGTACAACATCACATAATATCAGGGCGTCTGACTCCAGCAACTTTGTCCCATTCCTCTGGGGAGAGCATGTCAGCCATGTACTTCTCTTGACCACGCCAAAGGATCTTGTCAATGACACCAAACTCCTTTGCCTTCAAGGAATCCATATAAAATGGTCCTCTCATCACCTTGTCTATTTTCTCTGGTGGATTCCCCGTGTGCCTTGCTAAAAGTCTCACTAAGGTGTTCCTGTTGTGCACAACCTCTTTCGCCCGAATAACAACATCAGATGCTTGCATCATTCCATATGAAGGGATACGAGGTTGCTGAATCATAGCTTTGGCATGAGGGAACATATAGCGTTTTCCTTTCTTTCCTGCTGCAAGTACAAGACAGGCATGACCTGCCGCAGCTCCTATACAAAGTGTATGGATCTCAGTTTTCATCCGCATCATGGCATCATAGATAGCAAAACCTTCACTCTCCATTCCAACTGGTTCACCATCATCACGAGCTGTTCCTGTGGAGTTGATGTATATGTAAACAGGTTCTTTACTATTCATCCACTCAAGGTACATCAACTGCGCAACGACAAGCTCTGTAACTGCTGGCACCAACGGCATGCCAATGTAAACAATTCGGCCATGAAGAAGCAATGATGGCAAGTCAGGGGGAGGCCTTCTAGGCCTGTGCTGGCTGTAAGAACTGCTAGATCGTTCCACCTGCGCGGGCGAGGCCATGAGCTTGGCGTTCTGGAAGATCTCGAGGAACGGCAGGTGGTCGTCGCCGCGGCGCCCGCCACCTGCCGCCGCAGCCTGGAGCTCCTCCGGCGAGGCGGCGGCGAGGGTGGACAGGAACGGGTCGGCCCTCGGGTTGAAGAGCGGGTTCGGGCTCCCCCCCGACGCCGCCCGCGCCACCAGCGCGGAGGACGCCGCCGCGCCACCCCGCGCCTGGCGGAGCAAGGTCGGAGGCAGGGAGAGGAACGAGGAGGAGGCCCCGGAGGAAGGTGCAGTGGAGGGCGTGGGGAGGCGGAGCGACAGGGAGGCGGACGCCATGGCGGCGGGCGGAGCTCGGCGGCGGCAGCCGTGCGAGCTCGAGCTCGGGGTGTGGGAGGTGAAGATTGGATAATTTTG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0213400.1 | 3 | 12854163 | C | T |
| Osa03LNT0213400.1 | 3 | 12854977 | A | C |
| Osa03LNT0213400.1 | 3 | 12854630 | C | T |
| Osa03LNT0213400.1 | 3 | 12856019 | G | A |
| Osa03LNT0213400.1 | 3 | 12856544 | A | C |
| Osa03LNT0213400.1 | 3 | 12856836 | T | C |
| Osa03LNT0213400.1 | 3 | 12857419 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0213400.1 | osa-miR156j-3p | Cleavage | 4.0 | 17.717 | 1 | 22 |
| Osa03LNT0213400.1 | osa-miR166a-3p | Cleavage | 5.0 | 21.264 | 1 | 21 |
| Osa03LNT0213400.1 | osa-miR166b-3p | Cleavage | 5.0 | 21.264 | 1 | 21 |
| Osa03LNT0213400.1 | osa-miR166c-3p | Cleavage | 5.0 | 21.264 | 1 | 21 |
| Osa03LNT0213400.1 | osa-miR166d-3p | Cleavage | 5.0 | 21.264 | 1 | 21 |
| Osa03LNT0213400.1 | osa-miR166f | Cleavage | 5.0 | 21.264 | 1 | 21 |
| Osa03LNT0213400.1 | osa-miR166g-3p | Cleavage | 5.0 | 21.264 | 1 | 21 |
| Osa03LNT0213400.1 | osa-miR166h-3p | Cleavage | 5.0 | 21.264 | 1 | 21 |
| Osa03LNT0213400.1 | osa-miR166m | Cleavage | 5.0 | 21.264 | 1 | 21 |
| Osa03LNT0213400.1 | osa-miR166j-3p | Cleavage | 5.0 | 21.264 | 1 | 21 |
| Osa03LNT0213400.1 | osa-miR1862a | Translation | 3.0 | 21.461 | 1 | 24 |
| Osa03LNT0213400.1 | osa-miR1862b | Translation | 3.0 | 21.461 | 1 | 24 |
| Osa03LNT0213400.1 | osa-miR1862c | Translation | 3.0 | 21.461 | 1 | 24 |
| Osa03LNT0213400.1 | osa-miR1870-5p | Cleavage | 5.0 | 16.021 | 1 | 24 |
| Osa03LNT0213400.1 | osa-miR1862d | Cleavage | 3.0 | 21.461 | 1 | 24 |
| Osa03LNT0213400.1 | osa-miR1862f | Translation | 3.5 | 21.461 | 1 | 20 |
| Osa03LNT0213400.1 | osa-miR1862g | Translation | 3.5 | 21.461 | 1 | 20 |
| Osa03LNT0213400.1 | osa-miR5161 | Cleavage | 4.0 | 16.024 | 1 | 20 |
| Osa03LNT0213400.1 | osa-miR1862e | Cleavage | 2.5 | 21.435 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0213400.1 | 3 | qLEI3 | Resistance or Tolerance | Submergency tolerance | nan | nan |
| Osa03LNT0213400.1 | 3 | qGL3-1 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0213400.1 | 3 | qOE3-1 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0213400.1 | 3 | qTA3 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0213400.1 | 3 | ccfs3 | Physiological trait | Source activity | RM16 | RM282 |
| Osa03LNT0213400.1 | 3 | nan | Physiological trait | Eating quality | RZ574 | RZ284 |
| Osa03LNT0213400.1 | 3 | ccf3b | Physiological trait | Source activity | RM16 | RM282 |
| Osa03LNT0213400.1 | 3 | qLEI3 | Resistance or Tolerance | Submergency tolerance | RM7249 | RM3803 |
| Osa03LNT0213400.1 | 3 | nan | Resistance or Tolerance | Other stress resistance | RM4512 | RM8208 |
| Osa03LNT0213400.1 | 3 | nan | Resistance or Tolerance | Other stress resistance | RM4512 | RM8208 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)